KEGG   Mizuhopecten yessoensis (Yesso scallop): 110463294
Entry
110463294         CDS       T05079                                 
Name
(RefSeq) superkiller viralicidic activity 2-like 2
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:3.6.4.13]
Organism
myi  Mizuhopecten yessoensis (Yesso scallop)
Pathway
myi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:myi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110463294
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:myi03019]
    110463294
   03041 Spliceosome [BR:myi03041]
    110463294
   03009 Ribosome biogenesis [BR:myi03009]
    110463294
   03016 Transfer RNA biogenesis [BR:myi03016]
    110463294
Messenger RNA biogenesis [BR:myi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     110463294
Spliceosome [BR:myi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    110463294
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    110463294
Ribosome biogenesis [BR:myi03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    110463294
Transfer RNA biogenesis [BR:myi03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    110463294
SSDB
Motif
Pfam: MTR4_beta-barrel DSHCT DEAD MTR4-like_stalk Helicase_C ResIII nSTAND3 DUF3638 AAA_22
Other DBs
NCBI-GeneID: 110463294
NCBI-ProteinID: XP_021373459
Position
Unknown
AA seq 1031 aa
MADAFGDDLFNVFEEKTEVAAPDSDTKEPVKETTDSNTTDAQRTDDLLKSIVGKRSAENN
DDNEDNPTKKAKAIPQDLGQTDVMPRIQVHKVDTVEACQHEVAIPPEAEFAPLKAVSAKP
AKEYPFILDPFQKEALLCLENNQSVLVSAHTSAGKTVVAVYAIAMSLRDKQRVIYTTPIK
ALSNQKYRELFEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVGWVVFD
EIHYMRDKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTEYR
PTPLQHYIFPSGGDGIHLVVDENGEFREENFNTAMSVLRDSGDASKGDKWGRRGGAKGNE
SNCFKIVKMIMERSFAPVIVFSFSKKDCEAYAMQMAKLDFNTEEEKTLVEEVFNNAIDNL
SDDDKKLPQVEHVLPLLRKGVGIHHSGLLPLLKETIEILFSEGLIKALFATETFAMGLNM
PARTVLFTSARKFDGKDFRWVTSGEYIQMSGRAGRRGIDDRGIVILMVDEKMSPQAGKTI
VKGLADPLNSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNYAAIPDLCEKLKKLEED
YANVEVPNEDQVGPYFKIRQQLDNLGKELLLYIQKPQYLLPFLQPGRVIKVKNGEHDFGW
GVLVNLQKKSNQKKSVEVADAVYVAEVLLNLTKDSARSRNIASIKPCSSGTRGEMQVVPV
VTSLIQAVSAVRLYIPQDLRPPDNRQSVSKSLQEVEKRFPDGVPLLDPVEDMGIREKGLK
EIVKKIEAFEHRMYSHPLHKDPNLEEYYKDYEKKAKVGNDVKAVKLELKKKKSLLQMDEL
KCRKRVLRRLGYCTASDVIELKGRVACEISSGDELLLTELLFNGVFNDLTTQQTCALMSC
FVFEEKSNEMPKLTEALSGPLRIMQDTARRIARVSREAKIEVDEEQYVESFKPHMMDIVN
AWCNGATFAEICKMTDIFEGSIIRCMRRLEETLRQMCQAAKAIGNTELENKFAEAIRSIK
RDIVFAASLYL
NT seq 3096 nt   +upstreamnt  +downstreamnt
atggcagacgcctttggtgatgatcttttcaatgtgtttgaagagaaaacagaggtagcc
gcgcctgacagtgacactaaagagcctgtcaaagaaaccacagattcaaatacgaccgac
gctcagagaactgatgatctactaaagagcattgtgggtaaaagatcggcagaaaacaac
gacgataatgaagacaatccgacaaagaaagccaaggccattccacaagacttggggcag
acagatgttatgcccaggattcaagtccataaagtagacactgtggaagcctgtcaacat
gaggttgccataccaccagaagcggagtttgctcccctgaaggctgtatcagccaaacct
gccaaggagtatccttttatcttggatccgttccaaaaggaggctctgctatgcctggaa
aacaaccaatcagtgctggtgtctgcacatacgtctgctggcaagactgttgtcgctgtg
tacgccatagccatgtcactgcgggacaaacaacgtgtgatctacaccactcccatcaag
gccctcagtaaccagaaataccgggagctgtttgaggagtttcaggatgtggggctcatg
actggtgatgtcacaattaatcccactgctagctgtctcgtcatgacaacagagattcta
cggagtatgttgtacagaggttcagagatcatgagggaagttggctgggtcgtatttgat
gaaattcattatatgcgtgataaagagaggggtgtggtctgggaggagacgatcatccta
cttcctgataacgtccattatgtgttcctgtcagctactatccctaacgctcgccagttt
gctgagtggatctgtcatctgcacaaacagccctgtcatgtggtgtatacagaatacaga
cctaccccactacaacactacatttttccatctggaggtgacggcatacatcttgttgtg
gatgaaaatggtgaatttcgagaagagaactttaacacagccatgtctgtgttacgtgac
tcaggtgatgcgtccaagggggataaatggggacgacgaggtggagcaaaaggcaacgaa
tcaaactgctttaagattgtgaagatgataatggagaggagctttgcccctgtgattgtg
tttagtttcagtaaaaaagattgtgaggcctatgccatgcagatggcaaagctagacttc
aatacagaggaagaaaaaacgttagtagaagaggtcttcaacaatgcgatagacaacttg
tctgacgatgacaaaaaattaccacaggtggaacatgtgctgccactactgaggaaaggt
gtgggcatccatcactctggtctactgcccctgctcaaggaaaccatagagatcctcttc
tcagaaggactcattaaggcactctttgctacagagacgtttgctatggggctcaacatg
ccagccaggacggtactgttcactagtgcaaggaaatttgatgggaaagatttccgatgg
gtaacttcgggagagtacatccagatgagtggtcgtgctggacgaagaggcattgatgac
cgtggaattgtcattctgatggttgacgaaaagatgagtcctcaagcagggaaaactatt
gttaagggcctggctgaccccctgaactctgccttccacttgacctacaacatggtgctg
aacctgctgcgagtggaggagatcaatccggagtacatgctggagcgatccttctatcaa
ttccagaactacgcagctattcccgatctatgtgaaaaattaaagaagttggaggaggac
tatgctaacgtagaggttccaaatgaggaccaggtcggaccctactttaaaataagacaa
cagttggacaacctcggcaaggagcttctactgtatatacagaaaccacagtacttactg
cccttcttacaaccaggcagggttatcaaggtgaaaaatggagagcatgactttggctgg
ggagtacttgtcaacctacagaaaaagtcaaaccagaagaagtcagtagaggtggcagac
gcagtgtatgtggccgaggtcttactgaacctgaccaaggatagtgcccgctcacgtaat
atagcctctataaaaccgtgttcctcaggcacgcgcggtgaaatgcaggttgttcccgtg
gtaaccagtctgatccaggcagtcagtgctgtgagactgtacatcccccaggaccttcgt
ccacctgacaacagacagagtgtgtcaaagtctctccaggaagtggagaagaggttcccc
gatggtgtgccacttctcgaccccgtagaggacatgggcatcagggagaaaggtctcaag
gagattgtcaagaaaattgaggcatttgagcacagaatgtactcccacccactacacaaa
gaccccaatctggaggaatactacaaggattacgaaaagaaagctaaggtagggaatgat
gtgaaggccgttaagttggagctaaagaagaagaagtcgttactgcagatggatgaatta
aagtgccgcaagcgggtcttacggcgccttggttactgtactgcctctgatgtcatagaa
ctaaagggcagggtggcttgtgagatcagcagtggggatgagctcctgcttaccgaactt
ctctttaacggtgtgttcaatgatctgacaacccaacagacctgtgctctcatgagctgt
tttgtctttgaggaaaaatccaatgagatgcccaaactgacggaggccttatctgggccg
ctcagaatcatgcaggatacagctcgacgaatcgcacgggtcagtcgggaggccaagata
gaggtggacgaggaacagtatgtcgagtcgttcaaacctcacatgatggacattgtcaat
gcatggtgcaatggggccacttttgcagagatttgtaaaatgacggacatatttgaagga
agtataatccggtgtatgcgacggttggaagaaacactcagacagatgtgccaagcagcc
aaagccattggtaacactgaactggagaacaaattcgcagaagctatccggagtataaag
agggatatagtgttcgctgccagtttgtacttgtga

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (205)   
   KEGG ORTHOLOGY (1)   
   RefGene (201)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (224)   

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