KEGG   Myroides sp. ZB35: BK054_02950
Entry
BK054_02950       CDS       T04543                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
myz  Myroides sp. ZB35
Pathway
myz03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:myz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BK054_02950
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:myz03021]
    BK054_02950
   03400 DNA repair and recombination proteins [BR:myz03400]
    BK054_02950
Enzymes [BR:myz01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BK054_02950
Transcription machinery [BR:myz03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BK054_02950
DNA repair and recombination proteins [BR:myz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BK054_02950
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 RnfC_N
Other DBs
NCBI-ProteinID: APA91201
Position
complement(644828..648640)
AA seq 1270 aa
MITNQTERLNFASTKNIPAYPDFLDIQVKSFKDFFQLETKSEERGKEGLYNTFMENFPIT
DTRNQFVLEFLDYFVDPPRYSIEECIDRGLTYSVPLKARLKLYCTDPEHEDFETIVQDVY
LGTIPYMAPSGTFVINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEF
ATDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVSKTGLKKYSGRRL
AARVLNTWHEDFVDEDTGEVVSIERNEIILDRDTVLDKDNIEEIIEANVKTILLHKEDNN
QADYAIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEV
GRYRMNKKLNLDTPIDKQVLTKEDIITIVKYLIELINSKAEIDDIDHLSNRRVRTVGEQL
SAQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLAVYAK
VNNMGFIETPYRPVTEGQVDIVNDPVYLSAEEEEGMLIAQANIPVDEKGFITEQKVVVKE
EGDFPVVEPKDVHYTDVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLRPESP
IVGTGLERQVASDSRVLINAEGEGTVEYVDAQKIIIKYDRTDEERLISFDPDEKTYNLIK
FRKTNQSTSINLKPIVRRGDRVTKGQVLCEGYATQQGELALGRNMKVAFMPWKGYNFEDA
IVISERVVREDIFTSIHIDDYTLEVRDTKLGNEELTNDIPNVSEEATKDLDENGMIRIGA
EVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVLDKKLFA
RAVKDKRKRSKDKDELALLETRFEVKFNELKERLVEKLFFIVNGKTSQGVLNDLGEEILP
KGKKFTQKMLFAVDDFAHLTKGQWTTDEDTNGMITDLIHNYKIKLNDLQGVLRREKFMIT
VGDELPSGILKLAKVYIAKKRKLRVGDKMAGRHGNKGIVARIVRDEDMPFLEDGTPVDIV
LNPLGVPSRMNIGQIYETVLGWAGQKLGKKYATPIFDGAELDQINALTDEAGIPRFGHTY
LYDGGTGERFHQRATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWALEAYGASSTLREILTVKSDDVIGRAKTYEAIVKGETMPEPGLPESFNVLMHELK
GLGLDIRLEE
NT seq 3813 nt   +upstreamnt  +downstreamnt
atgatcacaaatcagactgaaagattaaattttgcctctacaaagaacatacctgcgtat
ccagatttcttggatattcaagttaagtcttttaaagatttctttcaattagaaacgaaa
tctgaagagagaggtaaggaaggtttatacaataccttcatggagaacttcccgatcact
gatacaagaaaccagttcgtattggagttccttgattactttgttgatcctcctcgttat
tcaatcgaagagtgtattgatagaggattaacttacagtgttccgctaaaagcgcgttta
aaattgtactgtactgatcctgaacacgaagattttgaaacaatagttcaagatgtttat
ttaggaacaattccgtatatggcgccaagtggtactttcgtaatcaatggagcagagcgt
gttgtagtttcacaattacaccgttcacctggtgttttctttggacagtcattccatgca
aatggaactaagttatattcggcgagagtaattccttttaagggatcatggattgagttt
gctaccgatattaatagtgtaatgtacgcttatatcgatagaaagaaaaagttacctgtt
acaacattattccgtgctattggattcgaaagagacaaggatatcctagagattttcgac
cttgcagaggaagttaaagtatcaaaaacaggactaaaaaaatatagcggaagacgtctt
gctgcacgtgtgttaaacacttggcatgaggatttcgtagatgaggatacaggagaagtt
gtttcaattgagagaaatgagattatcttagaccgtgatacagtcctagataaagataat
atcgaagaaatcattgaggctaacgttaagacgatccttttacataaagaagataataat
caggcagattatgccatcatacataatacattacagaaggaccctactaactctgaaaaa
gaggcagtagagcacatctaccgtcagttgcgtaatgcagaaccgccagatgaggaaact
gcacgtggtattattgataaattgttcttctcagatcaacgttacaatctaggtgaagtt
ggtcgttatagaatgaacaagaaacttaatcttgatactccaattgacaaacaagtttta
acaaaagaggatattattactattgttaaatacttgattgaattaattaactcaaaagct
gagattgatgatatcgatcacttatctaaccgtcgtgttagaacagtaggagagcaatta
tctgctcagtttggtgttggtttagctcgtatggctagaactattcgtgagcgtatgaac
gtacgtgataacgaggtgtttactccaatcgacttaattaacgctaagactttatcgtca
gttattaattcattcttcggaacgaaccagttatctcaattcatggatcaaacgaatcca
ttagctgagattacacacaaacgtcgtttatcagctctaggacctggaggtttatctaga
gaaagagcaggttttgaggtgcgtgacgttcactatactcactatggacgtctatgtcct
attgagacaccagagggaccaaacattggtttgatttcatctttagcggtttatgcgaaa
gtaaataatatgggattcatcgaaactccttaccgtccagttactgaagggcaagtagat
atcgttaatgatccggtttatttaagtgcagaagaggaagaaggtatgttaatcgctcaa
gcgaacattcctgttgatgaaaaaggatttatcactgagcaaaaagtagtagtaaaagaa
gagggtgacttccctgtagttgagccaaaagatgttcactatactgacgttgcaccaaat
cagattgcttctatttctgcgtcattgattcctttcttagagcacgatgatgccaaccgt
gcgttgatgggatctaacatgatgcgtcaagcggttcctttattacgtccagaatctcca
atcgtaggtactggattagaaagacaagtagcttcagattctcgtgttttaattaatgct
gaaggagaaggtactgttgagtatgttgatgctcagaagatcatcattaagtatgatcgt
actgatgaagagcgtttaattagctttgatccagatgagaaaacatacaacttaattaag
tttagaaaaacgaatcaaagtacaagtatcaacttaaagccaattgtaagaagaggtgat
agagttactaaaggacaagtactttgtgaaggatatgctactcaacaaggagagcttgct
ctaggtcgtaatatgaaagtggcgttcatgccatggaaaggttacaacttcgaggatgct
atcgttattagtgaaagagtagtacgtgaagatatctttacatctatccatattgatgac
tatactttagaagttagagatactaagttaggtaacgaagagttaactaatgatattcct
aacgtttctgaagaggcaacaaaagatctagatgaaaacggtatgatccgcattggtgct
gaagttaagcctggtgatattcttatcggtaagatcactccaaaaggagagtctgatcct
actccagaagagaaattattacgtgctatctttggtgacaaagcaggagacgttaaagat
gcttcattaaaagcttctccatcattaagaggggttgttttagataagaaattgttcgca
agagcagtaaaagataaacgtaaacgttctaaggataaagacgaattggctttattagaa
actagatttgaagttaaattcaacgagttaaaagagcgtttagttgagaaattattcttc
atcgtgaatggtaaaacatctcaaggtgtattgaatgatttaggagaagagattttacca
aaaggtaagaaatttactcaaaaaatgttatttgcagtagatgatttcgctcacttaact
aaaggacaatggacaactgatgaggatacaaatggtatgattactgatttgatccacaac
tacaaaatcaaattaaacgatcttcaaggagttctaagaagagagaaattcatgattact
gtaggggatgagttaccatctggaattttgaaattagcgaaagtatatattgctaaaaaa
cgtaaattacgtgtaggagataagatggctggacgtcacggtaacaaaggtattgtagct
cgtatcgttagagatgaggatatgcctttcttagaagatggaacaccagtagatatcgta
ttgaacccattaggggtaccttctcgtatgaacattggacagatttatgaaacagtatta
gggtgggctggtcaaaaacttggtaaaaagtatgcgactccaatctttgatggtgctgaa
ttagatcaaatcaatgctcttacagatgaggcaggtataccacgttttggacatacttac
ttatatgatggaggtacaggagagagattccaccaacgtgcaactgttggggttatctat
atgctgaaacttggtcacatggtagatgataagatgcacgcgcgttctattggtccttac
tcattgattacgcaacaaccattaggaggtaaagctcagtttggtggtcaacgtttcgga
gagatggaggtttgggcattagaggcttatggagcatctagtacattacgtgaaatcttg
acggtaaaatcggatgacgttattggtagagctaaaacttacgaagcaatcgttaaagga
gagactatgccagaaccaggattaccagaatcattcaatgtattaatgcatgaattaaaa
ggtcttggactagacatcagattagaagaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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