KEGG   Candidatus Nanopusillus acidilobi: Nps_02740
Entry
Nps_02740         CDS       T04255                                 
Name
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
naa  Candidatus Nanopusillus acidilobi
Pathway
naa03030  DNA replication
naa03410  Base excision repair
naa03420  Nucleotide excision repair
naa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:naa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Nps_02740
   03410 Base excision repair
    Nps_02740
   03420 Nucleotide excision repair
    Nps_02740
   03430 Mismatch repair
    Nps_02740
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:naa03032]
    Nps_02740
   03400 DNA repair and recombination proteins [BR:naa03400]
    Nps_02740
Enzymes [BR:naa01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Nps_02740
    6.5.1.6  DNA ligase (ATP or NAD+)
     Nps_02740
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Nps_02740
DNA replication proteins [BR:naa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    Nps_02740
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     Nps_02740
DNA repair and recombination proteins [BR:naa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Nps_02740
   NER (nucleotide excision repair)
    Other NER factors
     Nps_02740
   MMR (mismatch excision repair)
    Other MMR factors
     Nps_02740
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C TetR_C_10 IF4E Terminase_6C Chor_lyase
Other DBs
NCBI-ProteinID: AMD29956
Position
complement(477931..479625)
AA seq 564 aa
MEFAKLAEVFRKLESVSEKNQKTEILARFIKEIDKDSLKETFMLLQGMIFYPWEDKDIGI
AEKFTIRALSLATGYDKDYIESLFVKTGDLGVVAEKLVTERKQKSIFTKKLTVKDVYNTF
RTIGELEGEGTQDKKIKYLANLFISSSPIEAKYIARLTLEDLKIGVGEGIIIDSIAMAFG
LPSENVEMAYSILNDFGELVRQILEKGKDIVFKLEPILGNPIRVMLAIKAESAKEALDVV
GRPAQVEYKYDGFRVQIHKKGDQISLWTRRLENVTKQFPDVIEYIKECFPNDKDFLVEGE
IVGYDRENKKYLPFQRISRRIKRKYDIEKMVKEIPVVVRIFDIIYYDGKSLINTPFRERR
KILESIVKQDMNKISLSESIITSSDDEAQKFFEEAISNGLEGVMFKKLDAPYHPGRRVGY
MVKLKPVKESLDVVIVGAEWGEGKRSGWLTSFIVAVRDEKTGKLLEVGEVGSGFKEKKES
PDDITFEEMTEMLKDYIEEQNGKYVKIKPKIVIEVLYDEIEKSPKYSSGYALRFPRFIRL
RPDKSVEDADTIDRLIEIYKSQKK
NT seq 1695 nt   +upstreamnt  +downstreamnt
atggagtttgcgaagcttgctgaggtgtttaggaaattggaatctgtttctgaaaaaaac
caaaaaacagaaatattggcaagatttattaaagaaatagataaagattctttaaaagag
acatttatgttattacaggggatgattttttatccatgggaagataaagatataggaata
gctgaaaaatttactattagagctttatctttggctacaggttatgataaagattatatt
gaaagtttatttgtaaaaacaggagatcttggtgtagttgcagagaaattagtaacagaa
agaaaacaaaaatcaatatttacaaagaaattaactgtaaaggacgtatataataccttt
agaactataggagaattagaaggggaaggaacacaagataaaaagattaaatatctggct
aatttatttatttcatcatcaccaatagaagcaaaatatattgcaagattaacattagaa
gatttgaaaataggtgttggagaaggaattataatagattctatagctatggcctttggt
ttaccatcagaaaatgtagaaatggcgtattcaattttgaatgattttggtgaattggta
agacaaattttagaaaagggaaaagatattgtatttaaattagaaccaatactaggaaat
ccaattagggtaatgttagcaataaaggcagagagtgctaaagaagctttagatgttgtt
ggaagacctgcgcaagttgaatataagtatgatggatttagggttcaaatacataagaaa
ggagatcaaatatctttatggactagaagattggaaaatgtaacaaaacaatttccagat
gtaatagaatatattaaagagtgttttccaaatgataaggattttttagtggagggagaa
attgttggatatgatagagaaaacaaaaaatacttaccatttcagagaatttcaagaaga
ataaaaagaaaatatgatatagaaaaaatggttaaagaaatacctgttgttgttagaatc
tttgatataatttattatgatggaaaatctttaataaatactccatttagggagagaaga
aaaatattagaatcaatagtaaagcaagatatgaataaaatatcattatcagaaagcata
ataacatcttcagatgatgaagcacaaaaattctttgaagaggcaattagtaatggttta
gagggtgttatgtttaaaaaattagatgcaccatatcatcctggaagaagggtcggttat
atggttaaattaaaacctgtaaaagaatctttagatgttgtaatagttggtgctgagtgg
ggagagggaaagagaagtggatggctaacatcttttatagttgctgttagagatgaaaaa
acagggaaattattggaagtaggggaagttggaagtggatttaaagagaaaaaagaaagt
ccagatgatataacatttgaagaaatgacagaaatgttaaaggattatatagaggaacag
aatggaaaatacgtaaaaattaaaccaaaaattgtaatagaagtgttgtatgatgaaata
gaaaaaagtcctaaatattcttcaggttatgcactaaggtttcctaggtttattagacta
agacctgataaatccgttgaggacgctgacactattgataggttgatagaaatatacaaa
agccaaaaaaagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (11)   
   KEGG COMPOUND (11)   
Chemical reaction (7)   
   KEGG ENZYME (3)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (53)   
   KEGG ORTHOLOGY (1)   
   RefGene (50)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (87)   

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