KEGG T02218: B005

Nocardiopsis alba: B005_1018

Entry

B005_1018 CDS T02218

Definition

viral (Super1) RNA helicase family protein

Orthology

K03581

exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]

Organism

nal Nocardiopsis alba

Pathway

nal03440

Homologous recombination

Class

Genetic Information Processing; Replication and repair; Homologous recombination [PATH:nal03440]

SSDB

Motif

Pfam:

AAA_30 HHH_4 UvrD_C_2 AAA_19 Viral_helicase1 HHH_5 AAA_11 Helicase_RecD PIF1 HHH AAA_22 DAP3 AAA_16 AAA_10 HHH_2 PhoH UvrD_C IstB_IS21 DUF2075 AAA_28 DUF258 ArgK Zeta_toxin TrwB_AAD_bind T2SE AAA AAA_12

Other DBs

NCBI-GI:

403508507

NCBI-GeneID:

13546833

UniProt:

J7L886

Position

complement(1059970..1062183)

AA seq 737 aa
MVQGVLERITYANEETGYTVAKVDTGRGSDDLLTVVGSLLGVQPGEALRLRGRWGSHPRY
GRQFQVDDYTTVLPATVQGIRRYLGSGLIKGIGPKMAERIVGHFGTDALDVIEEDPARLI
EVPGLGPKRTRLIADAWEEQKAIKEVMLFLQGVQVTTSLAVRIYKQYGDASIEVVQKEPY
RLADDVWGIGFKTADTIAQAVGIPHDSPERVMAGIRFTLSESSNEGHCFLPEERLISAAV
KILQVEAGLVIECVARLVADEGVARENVPGPEGEPVRAVYLLPFHRAEMGLATGLRTLLD
TPEERMPAFADVDWPVALDWLDRRAGTSLAEAQKEAVREALSRKVCVLTGGPGCGKSFTV
SSIVTMARAKGAEVILAAPTGRAAKRLTELTGHEASTVHRLLELRPGGEAAHDRDNPLDC
DLLVVDEASMLDLILANKLVKAVPPGAHLLLVGDVDQLPSVGAGQVLRDLLEEGSPIPSV
RLTHVFRQAQQSGVVTNAHRINQGEPPHLRGMADFFLFPCEETEEAAEMTVDVVARRIPR
RFGLDPLRDVQVLTPMKGGPAGSANLNSALQAALTPPGERVAERRFGGRIFRVGDKVTQI
RNNYEKGRNGVFNGTLGVVTGLDPVAQEVTVRTDEDEEIAYDFAELDELAHAYSITVHRS
QGSEYPAVVIPVTTSAWMMLQRNLLYTAVTRAKRLVVLVGSRRALAQAVRNVSSGRRHTA
LGHRLRLSGYSSADSLN

NT seq 2214 nt +upstreamnt +downstreamnt
gtggtccagggcgtccttgaacgcatcacctacgccaacgaggagaccgggtacaccgtc
gccaaggtcgacaccggtcggggctccgacgacctgctcaccgtcgtcggctcactcctc
ggggtccagcccggcgaggcactgaggctgcgcggccgttggggctcccacccccggtac
ggccgccagttccaggtcgacgactacaccaccgtgctgcccgccacggtgcagggcatc
cgccgctatctcggatccggcctgatcaagggcatcggacccaagatggccgaacggatc
gtcggccacttcggaaccgacgccctggacgtcatcgaggaggaccccgcccggctgatc
gaggttccggggttgggccccaagcgcacccggctcatcgccgacgcgtgggaggaacag
aaggccatcaaggaggtcatgctcttcctccaaggggtccaggtcaccacctcgctggcc
gtgcgcatctacaagcagtacggcgacgcctcgatcgaggtcgtccagaaggagccctac
cgactcgccgacgacgtgtgggggatcggcttcaagaccgccgacaccatcgcccaggcg
gtgggcatcccgcacgacagtcccgagcgggtcatggccgggatccggttcaccctgtcc
gagtcgagcaacgagggacactgcttcctgcccgaggagcggctgatctccgccgccgtg
aagatcctccaggtggaggcggggctggtgatcgagtgcgtggcccgcctcgtcgccgac
gagggggtggcccgggagaacgtccccggccccgagggggagccggtccgggccgtctac
ctgctgcccttccatcgtgccgagatgggtctggccaccgggctgcgcaccctgctggac
acacccgaggagcgcatgcccgccttcgccgacgtcgactggccggtggcgctggactgg
ctcgaccgccgcgccggtacctccctcgccgaggctcagaaggaggcggtccgggaggcc
ctgtcccggaaggtgtgcgtgctcaccggcggacccggctgcggcaagtccttcaccgtc
tcctccatcgtcaccatggcgcgggccaagggcgccgaggtcatcctggccgcgcccacc
ggtcgcgcggccaagcgcctcaccgaactcaccggacacgaggcctccaccgtgcaccgg
ctcctggagctgcgcccgggcggtgaggccgcgcacgaccgggacaaccccctcgactgc
gacctactggtggtcgacgaggcctccatgctcgacctcatcctggcgaacaagctggtc
aaggcggtcccgccgggagcccacctgttgctggtgggggacgtcgaccagctcccctcg
gtcggcgccgggcaggtcctccgcgaccttctggaggaggggtcgccgatccccagcgtg
cggttgacccacgtcttccggcaggcccaacagtccggggtggtcaccaacgcgcaccgg
atcaaccagggggagcctccccacctgcgggggatggccgacttcttcctcttcccctgt
gaggagacggaggaggccgcggagatgaccgtcgacgtggtcgcccgccgcatcccccga
cgcttcgggctcgacccgctccgcgacgtccaagtgctcaccccgatgaagggcggcccc
gccggttcggccaacctcaactccgcgctccaggccgcgctcaccccgccgggcgaacgt
gtcgccgaacgtcggttcggcggccggatcttccgggtgggcgacaaggtcacccagatc
cgtaacaactacgagaagggccgcaacggtgtcttcaacggcaccctcggggtggtcacc
ggcctcgatcccgtcgcccaggaggtgacggtgcgcaccgacgaggacgaggagatcgcc
tacgacttcgccgaactcgacgagctggcccacgcctactccatcaccgtgcaccgttcc
cagggcagcgagtatccggcggtcgtgattcccgtgaccaccagcgcctggatgatgttg
cagcgcaacctgctctacaccgccgtcacccgggccaagaggctggtcgtgctggtgggg
tcccgtcgtgccctggcgcaggcggtgcgcaacgtctcctcggggcgtcgtcacaccgcg
ctcggccatcgactgcgtctctccggttactcgagcgccgattccctcaactga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (27)   
   Pfam (27)   
All databases (36)   

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