KEGG T02218: B005

Nocardiopsis alba: B005_3125

Entry

B005_3125 CDS T02218

Gene name

ligD

Definition

DNA polymerase LigD, polymerase domain protein

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

nal Nocardiopsis alba

Pathway

nal03410	Base excision repair
nal03420	Nucleotide excision repair
nal03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:nal03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:nal03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:nal03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining

SSDB

Motif

Pfam:

DNA_primase_S

Other DBs

NCBI-GI:

403510565

NCBI-GeneID:

13544443

UniProt:

J7LBG3

Position

3257372..3258286

AA seq 304 aa
MRTTVRAGRRKVEIRHADKPLFGEDGATKEDLADYYARIAPLMLPLVKGRPVVLERFPEG
LDGSGFLVQHPSHPRWIRTVWTSSGRMMECQEAAALVWCADQAAITLHTWSSRTPRLGLP
DRMVLDLDPVGSGREAFAGCREAARVVREVLSELGLAAYVMTTGSRGLHVHSPLRPEVDD
MEVRRLAKAVADRVAARAPEEWTTRVRKAARHGRMFVDYLRNGPGQLAVAPYAVRARPGA
PVATPITWEELERISSSQEFSIDLERDECPFAGMRRHARSPRRALYLLDRGKGGVVPKPR
AGHV

NT seq 915 nt +upstreamnt +downstreamnt
atgcggacgacggtgcgagcgggacgccgcaaggtggagatccggcacgcggacaagccc
ctcttcggggaggacggggccaccaaggaggacctcgccgactactacgccaggatcgct
ccgctcatgctgcccctggtcaaggggcgcccggtcgtgctcgaacgcttcccggaaggg
ctggacggctccggattcctcgtgcaacacccctcgcacccccgctggatccgcacggtg
tggacctcttccggacggatgatggaatgccaggaggccgccgccctggtgtggtgcgcc
gatcaggccgcgatcaccctgcacacgtggtcctcccgtacccctcgtctgggactcccc
gaccgtatggttctcgacctcgacccggtcggttcgggccgggaggccttcgccggatgt
cgtgaggcggcccgggtcgtgcgcgaggtgctgtccgaactgggactggccgcctacgtg
atgaccaccggctcccgaggtctgcacgtccactcgcccctgcgcccggaggtggacgac
atggaggtccggagactggccaaggcggtcgccgaccgcgtcgccgcccgggcaccggag
gagtggaccacccgggtgcgcaaggcggcccgccacggccgtatgttcgtcgactacctc
cgcaacggtcccggacagctcgcggtggcgccgtacgcggtccgagcccggcccggagcc
ccggtggccaccccgatcacctgggaggagctggagaggatctcctcctcccaggagttc
tccatcgacctggaacgggacgagtgcccgttcgccggcatgcgccgccacgcccgttcc
ccgcgcagggccctctacctcctcgaccgggggaaaggcggggtcgtgccgaagccccgg
gcggggcacgtgtga

All links

Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (12)   

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