KEGG   Novosphingobium aromaticivorans: Saro_0023
Entry
Saro_0023         CDS       T00322                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
nar  Novosphingobium aromaticivorans
Pathway
nar03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:nar00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Saro_0023
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nar03021]
    Saro_0023
   03400 DNA repair and recombination proteins [BR:nar03400]
    Saro_0023
Enzymes [BR:nar01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Saro_0023
Transcription machinery [BR:nar03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Saro_0023
DNA repair and recombination proteins [BR:nar03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Saro_0023
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 RPOC_hybrid Apocytochr_F_C Peptidase_M23 YqfD
Other DBs
NCBI-ProteinID: ABD24472
UniProt: Q2GCD8
Position
complement(19422..23705)
AA seq 1427 aa
MNDLTKFTNQIAKPETFDQIQIGLASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRMKYKGVVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERILYFESYVVIEPGLTPLEKYQLLTEDELLDAQDEYGEDAFSAG
IGAEAVKHMLMNLDLVQEKEDLLQELATTKSELKPKKIIKRLKVVESFIDSGNRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGIYYLSMDRAGEPGEGMMLADMAEVHQALEA
KAVTLHSKIVARVPQTDEDGNQYLKRFETTPGRMLIGECLPKSHKVPFEIVNRLLTKKEI
GDVIDQVYRHTGQKDTVLFADAIMALGFRHAFKAGISFGKDDMIIPDSKDALVAETKELV
ADYEQQYQDGLITQQEKYNKVIDAWSRCGDQVANAMMEELKSSPIDPETGRQKPINAIYM
MSHSGARGSPAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVSQDCVVIEEDCGTERALEMRAIVQGGSTIASLGERILGRTL
AEDLIEAKSGEVIAQKGELLDEAAIAKIEAAGVQSARIRSPLVCEATQGVCGKCYGRDLA
RGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQVNEQSHLEAISDGTVQYRDIPT
ITDKRGRRLSLARNGEIVVIDTEGRERAIHRVPYGTHLLHENGAIISQGDRLAEWDPFTT
PVITEKPGIVRYQDLVDGKTLTEQTDEATGMSSRVVTENRAAGRGKKEDLRPRLTLLDEN
SGEAARYMMAPGTTLSVEDGQQVEAGDILARASREAAKTRDITGGLPRVAELFEARKPKD
NSIIAKIAGRIEFVRDYKAKRKIAIIPEEGEPVEYLVPKSRVIDVQEGDYVKKGDNLISG
SPDPHDILEVMGVEALAEYLVAEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITNGGDTT
LLPGEQVDLEEMLETNGKLEEGQQPAEGKPVLLGITKASLQTRSFISAASFQETTRVLTQ
AAVEGKKDSLIGLKENVIVGRLIPAGTGAGMNRMRVAASSRDAALRASYRKLQESLIAPA
TAAEEHAAELAQGPEAAIGDDPLATVEGETHGTDADAGDYLIEGDEA
NT seq 4284 nt   +upstreamnt  +downstreamnt
atgaacgacctgaccaaattcaccaaccagatcgccaagcccgagaccttcgaccagatc
cagatcggtctggcgagccccgagcgcatccgcagctggtccttcggcgagatcaagaag
ccggaaacgatcaactaccgcacgttcaagcccgagcgcgacggcctgttctgcgcgcgc
atcttcggtcccgtgaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagtac
aagggcgtcgtctgcgaaaagtgcggcgtcgaagtcaccgtcaccaaggtgcgccgcgag
cgcatgggccacatcgagctggccgcgccggtcgcccacatctggttcctcaagtcgctg
ccttcgcgcatcggcctgctgctcgacatgcagctcaagcagcttgagcgcattctctac
ttcgaaagctacgtggtcatcgagccgggcctgaccccgctcgaaaagtaccagctcctg
accgaggacgaactgctcgacgcgcaggacgagtacggcgaggacgccttctcggccggc
atcggtgccgaggccgtcaagcacatgctgatgaacctcgacctcgtgcaggaaaaggaa
gacctgctccaggagctggcgacgaccaagtcggagctaaagcccaagaagatcatcaag
cgcctcaaggtcgtggaatcgttcatcgattcgggcaaccgcccggaatggatgatcctc
gacgtcgtgccggtcattccgccagaactgcgcccgctggtgccgctcgacggtggccgc
ttcgcgacctccgacctgaacgacctctatcgccgcgtcatcaaccgcaacaaccgcctc
aagcgcctgatcgagctgcgcgcgccggacatcatcgtccgcaacgaaaaacgcatgctg
caggaggcggttgacgcgctgttcgacaacggccgtcgcggccgcgtgatcaccggcgcc
aacaagcgtccgctcaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgc
cagaacctgctcggcaagcgcgtcgactattcgggccgttcggtcatcgtgaccggtccc
gaactcaagctgcaccagtgcggcctgcccaagaagatggcgctcgagctgttcaagccg
ttcatctacgcccgcctcgatgccaaggggctgtcgatgaccctcaagcaggccaagaag
tgggtcgagaaggagcgcaaggaagtctgggacatccttgacgaggtgatccgcgagcac
ccggtcatgctgaaccgtgcgcccacgctgcaccgtctcggcatccaggccttcgaaccg
gtcctgatcgaaggcaaggcgatccagctgcacccgctcgtctgctcggccttcaacgcc
gacttcgacggtgaccagatggccgtccacgtgccgctttcgctggaagcccagctcgaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctctcgcccgccaacggcaagccgatc
atcgtgccttcgcaggacatggttctcggcatctattacctgtcgatggaccgcgctggc
gagccgggcgaaggcatgatgctggccgacatggccgaagtgcaccaggcgctggaggcc
aaggccgtcacgctgcactcgaagatcgtggcccgcgtgccccagaccgacgaggacggc
aaccagtacctcaagcggttcgagaccacgccgggccgcatgctcatcggcgaatgcctg
cccaagagccacaaggtgccgttcgagatcgtcaaccgccttctcaccaagaaggaaatc
ggcgacgtcatcgaccaggtctatcgccacaccggccagaaggacaccgtgctgttcgcc
gacgccatcatggcgctgggcttccgccacgctttcaaggccggcatctcgttcggcaag
gatgacatgatcatcccggacagcaaggacgcgctggttgccgagaccaaggaactcgtt
gccgactacgagcagcagtaccaggacggtctcatcacccagcaggaaaagtacaacaag
gtgatcgacgcctggagccgctgcggcgaccaggtggcgaacgccatgatggaagagctt
aagtcctcgcccatcgatccggagaccggtcgccagaagccgatcaacgcgatctacatg
atgtcgcactcgggcgctcgtggctccccggcgcagatgaagcagctcgcgggcatgcgt
ggcctcatggccaagccttcgggcgagatcatcgagaccccgatcatctcgaacttcaag
gaaggcctgaccgtccttgaatacttcaactcgacccacggcgcccgaaagggcctcgcg
gacaccgcgctcaagaccgcgaactcgggttacctgacccgccgtctggtcgacgtgtcg
caggactgcgtcgtgatcgaggaagactgcggcaccgaacgtgcgctggaaatgcgcgcg
atcgtgcagggcggctcgaccatcgcttcgcttggcgaacgcatccttggccgtaccctt
gccgaagacctgatcgaggcgaagtcgggcgaagtgatcgcgcagaagggcgaactgctc
gacgaagccgcgatcgcgaagatcgaggctgccggcgtgcagtcggcgcgcatccgctcg
ccgctggtttgcgaagcgacccagggcgtctgcggcaagtgctatggccgcgacctcgct
cgcggtacgccggttaacatcggtgaagctgtcggcgtcatcgccgcgcagtcgatcggt
gaaccgggcacccagctgaccatgcgtaccttccacatcggtggcgcggcgcaggtcaac
gagcagtcgcacctcgaggctatcagcgacggtaccgtgcagtaccgcgacatcccgacg
atcaccgacaagcgcggccgtcgtctgtcgctcgcccgcaacggcgagatcgtcgtgatc
gataccgagggtcgtgagcgcgcgatccaccgcgtgccctacggtacgcacctgctgcac
gagaacggtgcgatcatctcgcagggcgaccgcctggccgagtgggacccgttcaccacg
ccggtgatcaccgaaaagcccggtatcgtccgctaccaggatcttgtcgacggcaagacc
ctgaccgagcagaccgacgaagccaccggcatgtcgagccgcgtggtgaccgagaaccgc
gctgcgggtcgtggcaagaaggaagacctccgtccgcgcctgaccctgctcgacgagaac
tcgggcgaggccgcacgctacatgatggcgccgggcacgacgctgtcggtcgaggacggc
cagcaggtggaagcgggcgacatccttgcccgtgcctcgcgcgaagccgccaagacccgc
gacatcaccggcggtctgccgcgcgttgcagagctgttcgaggcccgcaagccgaaggac
aactcgatcatcgccaagattgcgggccgcatcgagttcgtgcgtgactacaaggccaag
cgcaagatcgcgatcatcccggaagagggtgaaccggtcgagtacctggtgccgaagagc
cgcgtgatcgacgtgcaggaaggcgactacgtcaagaagggcgacaacctgatctcgggc
tcgcccgatccgcacgacatcctggaagtcatgggcgtcgaggctctggccgagtacctc
gtcgcggaaatccaggaagtctaccgcttgcagggcgtgaagatcaacgacaagcacatc
gaggtgatcgttcgccagatgctgcagaaggtcgagatcaccaacggtggcgacaccacc
ctgctgccgggcgaacaggtcgacctcgaggagatgctcgaaaccaacggcaagctcgag
gaaggccagcagcctgccgaaggcaagccagtgctgctcggcatcaccaaggcctcgttg
cagacgcgttcgttcatctcggcggcgtcgttccaggagaccacccgcgtgctcacgcag
gcggccgtggaaggcaagaaggactcgctgatcggcctcaaggagaacgtgatcgtcggc
cgtctcatccccgccggtaccggcgcgggcatgaaccgcatgcgcgtcgcagcctccagc
cgcgatgctgccctgcgcgcctcctaccgcaagctccaggaatcgctgatcgctccggcg
acggcggctgaagagcacgcggcggaactcgcccagggtcccgaagcagcgatcggcgac
gatccgctggcgacggtcgagggcgagacccacggcaccgatgccgacgcgggcgactac
ctgatcgagggtgacgaagcctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (38)   
   KEGG ORTHOLOGY (1)   
   RefGene (35)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (10)   
   Pfam (10)   
All databases (57)   

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