KEGG   Notothenia coriiceps (black rockcod): 104941332
Entry
104941332         CDS       T04920                                 
Symbol
cul4b
Name
(RefSeq) cullin-4B
  KO
K10609  cullin 4
Organism
ncc  Notothenia coriiceps (black rockcod)
Pathway
ncc03420  Nucleotide excision repair
ncc04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ncc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    104941332 (cul4b)
  09124 Replication and repair
   03420 Nucleotide excision repair
    104941332 (cul4b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ncc04121]
    104941332 (cul4b)
   03400 DNA repair and recombination proteins [BR:ncc03400]
    104941332 (cul4b)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ncc04147]
    104941332 (cul4b)
Ubiquitin system [BR:ncc04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Cullin
     104941332 (cul4b)
DNA repair and recombination proteins [BR:ncc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      104941332 (cul4b)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      104941332 (cul4b)
Exosome [BR:ncc04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   104941332 (cul4b)
SSDB
Motif
Pfam: Cullin Cullin_Nedd8 SecA_SW DUF3678
Other DBs
NCBI-GeneID: 104941332
NCBI-ProteinID: XP_010764721
UniProt: A0A6I9MSG8
Position
Unknown
AA seq 861 aa
MFPTGLSSPNPPPPPTQEARPVATDVKPDSGNITSPKKRKINGSEREDTADKSLNSSSSS
SSSCSPLHIQKKLRFEDSVDIIGLDVKMAEEAAAAAVVAASCSNNKSKAVFLPGVGTGHH
ANGLTKPAGSSGTFSNSKPGAAKKLVIKNFREKPKLPENYTQETWQKLKEAVEAIQNSTS
IKYNLEELYQAVENLCSHKISAKLYKQLRAVCEDHIKSQIEQFREDALDSVLFLKKIDKC
WQDHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRFYIISDLKVQCKTIDGILL
LIEMERNGEAIDRTLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQRLMQEREVPD
YLHHVSKRLEEEADRVITYLDQSTQKPLIASVEKQLLGEHLTTTLQKGLTHLLDENRIQD
LSLLYQLFSRVRGGVQVLLQHWIEYIKAFGSTIVINPEKDKTMVQELLDFKDKVDHVIDI
CFIKNEKFVNAMKEAFETFINKRPNKPAELIAKHVDSKLRAGNKEATDEELEKMLDKIMI
IFRFIYGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDM
ELSKDIMVQFKQYMQCQNIPGNIELTVNILTMGYWPTYVPMEVHLPAEMVRLQEIFKTFY
LGKHSGRKLQWQSTLGHCVLKAEYKEGKKELQVSLFQTLVLLMFNEGEEFTLEEIKLATG
IEDSELRRTLQSLACGKARVITKIPKSKDVEDGDKFSCNDDFRHKLFRIKINQIQMKETV
EEQASTTERVYQDRQYQIDAAIVRIMKMRKTLSHNLLMSEVYNQLKFPVKPADLKKRIES
LIDRDYMERDKENPNQYNYVA
NT seq 2586 nt   +upstreamnt  +downstreamnt
atgtttccaacaggtttatcttcccctaatcccccaccaccgccaacccaggaggctaga
ccagtggctactgatgtcaaacccgacagcggtaacatcacatctccgaagaagaggaaa
ataaacggctctgagagggaagacactgctgacaagtccctgaattcctcctcctcttcc
tcttcctcctgctccccgctgcacatccagaagaagttgaggtttgaggattcagtggat
atcattggactggatgtgaaaatggctgaggaggctgctgctgcggccgtcgttgctgct
tcttgctccaataacaaaagcaaagccgtgttcctgcccggtgtcgggacgggacaccat
gcgaacggactgacgaagcccgcaggctcctccgggaccttctccaacagtaaacccggg
gcggccaagaaactagtcatcaagaacttcagagaaaaacccaaattgcctgagaactac
acgcaggagacctggcagaagctgaaggaggcggtggaggccatacagaacagcacttca
atcaagtacaacctagaagagctctatcaggcagttgagaacctgtgctcccataagata
tctgccaagctttacaaacagctgagggccgtgtgtgaagaccacatcaagtcacaaatt
gagcaattcagagaggatgccttggacagtgtgcttttcctaaagaagattgacaaatgc
tggcaagatcactgcagacaaatgatcatgattaggagtatatttttgtttttggaccga
acctatgttttacaaaactcaatgctgccatctatctgggacatgggtctggagctgttc
aggttctacatcatcagcgatctgaaggtccagtgtaaaaccatcgacgggatactgctg
ctcatagagatggagcgaaacggagaagcgatagaccgcactttactgaggagcctgctg
agcatgctctctgacctgcagatttatcaagactcctttgagcaacgctttttggaggaa
actaatcgcctgtacgctgcagagggacagaggctgatgcaggagagagaggtcccagac
tatctccatcatgtcagcaagcgcctggaggaggaggctgacagagtcatcacgtattta
gatcagagcacacaaaaaccgctcattgctagtgtggagaagcagttgctgggtgaacat
ctcacgactactctgcaaaaaggtctgactcacctgctggatgagaacagaattcaggat
ctgtctcttctctatcaactcttcagtcgagtgcgaggtggcgttcaggtcctcctgcag
cactggatagaatacataaaggcttttggaagcacaatcgtaatcaatccagaaaaagac
aaaacaatggtgcaagagttgctggactttaaggacaaggtggatcacgtcattgacatc
tgcttcataaagaacgagaagtttgtcaacgccatgaaggaggctttcgagacattcatc
aacaaacggccaaataaacctgcagagctcatagcaaaacacgtggattcaaagttaagg
gcaggaaacaaagaagcaacagacgaagaactggagaagatgctggataaaataatgatt
atttttagattcatctatggaaaggatgtttttgaggccttttacaaaaaggatcttgcc
aaaaggttgttggttggaaaaagcgcctctgtggatgctgaaaaatctatgttgtcgaag
ctgaaacatgaatgtggagcagcgttcaccagcaaactggagggcatgttcaaggatatg
gagctttctaaagacatcatggtgcagttcaaacagtacatgcagtgccaaaacattcca
ggcaacattgagctgacggtgaacatcctcacgatgggttactggccaacctatgtcccc
atggaagtgcacctgcctgctgagatggtgcgactacaggagatcttcaagactttctac
ctgggcaaacacagcggcaggaagctgcagtggcaatctacactcggccattgtgtctta
aaagctgaatataaagagggcaagaaggagctgcaggtgtccctcttccaaacgcttgtg
ctgctgatgttcaacgaaggagaggagttcacactggaggagatcaaactagcaaccgga
atagaggacagtgaactgcgccggactctgcagtcacttgcttgtgggaaggcacgtgtc
atcaccaaaatcccaaaaagcaaagatgtggaggatggggacaagttttcttgcaatgat
gacttcagacacaagctcttcaggatcaaaataaaccagatccagatgaaagaaacggtg
gaggagcaagccagtaccacagaaagggtctatcaggatcgtcagtatcagattgatgct
gccatcgtgcggatcatgaagatgaggaagactctgagccataatctcttgatgtctgaa
gtgtacaaccagctcaagttccctgtcaagcctgctgacttgaagaagaggatagagtct
cttattgacagggactatatggagcgtgacaaggagaaccccaaccagtacaactatgtg
gcttag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (31)   

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