KEGG   Notothenia coriiceps (black rockcod): 104948016
Entry
104948016         CDS       T04920                                 
Symbol
ddx56
Name
(RefSeq) probable ATP-dependent RNA helicase DDX56
  KO
K14810  ATP-dependent RNA helicase DDX56/DBP9 [EC:5.6.2.7]
Organism
ncc  Notothenia coriiceps (black rockcod)
Brite
KEGG Orthology (KO) [BR:ncc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ncc03009]
    104948016 (ddx56)
Enzymes [BR:ncc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     104948016 (ddx56)
Ribosome biogenesis [BR:ncc03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    104948016 (ddx56)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII DUF4495
Other DBs
NCBI-GeneID: 104948016
NCBI-ProteinID: XP_010772462
UniProt: A0A6I9N7G1
Position
Unknown
AA seq 562 aa
MAAEMLNFHEMGFDDRLLKAVADLGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAY
AIPVIQRILASKQSVREQEVRALILVPTKELGQQVQAMMRQLTAYCSRDVRVADITGKAD
LSAQRPILMEKPDVVVGTPSRVLAHLSAQNLVLHSSLEMLVVDEADLLFSFGFEADLKNL
LCHLPKIYQSFLMSATLTEDVQALKELLLHNPVILKLQGSQLPDSSQLQQYGLKCEEEDK
FLLIYTLLKLSLVQGKTLLFVGAVDRSYRLKLFLEQFGIPACVLNSELPVQSRCHIITQF
NQGFYDYIIATDEQSLADPAAAPLPTAGKGKKKKKNTDKGGRAKDKEYGVSRGVDFQNVS
NVINFDFPMTVESYIHRVGRTARADNPGTALSFISHTEIGVLSEVEDALTGDTSDCVLKP
YEFKMDEIEGFRYRCRDAMRSVTKQAVKEARLKEIKQELLNSEKLKTYFEDNPRDLQLLR
HDKDLHPAVIKPHLRNVPDYLIPETLKGVVNPLSNRRKKKKMVKSKPDGVIKSSFKNIQG
KNPLKSFRYSAGRNRKDTPVKS
NT seq 1689 nt   +upstreamnt  +downstreamnt
atggctgctgaaatgcttaattttcatgaaatgggctttgacgaccgtcttttaaaggcg
gttgcagatctcgggtggtcccagcccactttaatccaggagaaggcgatccctctggct
ctggaggggaaagaccttctagcacgagccaggactggatcaggaaagaccgctgcttac
gctatccccgtcatccagcgcatcctggcctccaaacagagcgttagagaacaggaagtg
agagctctgatcctggttccaaccaaagagctgggtcagcaggttcaggccatgatgaga
cagttaacagcgtactgctccagggacgtccgagtggccgacatcacggggaaagctgac
ctatcagcacagaggcctatcttaatggagaagccagatgtggttgtggggaccccgtca
cgagtgctcgcccacctcagtgcccagaacctggtcctgcattcgtcccttgagatgctg
gtggtagatgaggccgacctgctcttctcttttggcttcgaggcagacctgaagaacttg
ttgtgtcatttgccaaagatctaccagtcgttcctgatgtcagctactctcacagaagac
gttcaggccttaaaggagctgctgctgcacaaccctgtgatcctgaagctccagggctct
cagctccccgacagcagccagctgcagcagtacggcctcaagtgtgaggaggaggataag
ttcctgctcatctacacgctgctgaagctgagcctggttcaggggaagacgctgttgttt
gtgggagcggtggaccgaagctacagactcaaactgttcctggagcagtttggtattcct
gcctgtgtgctgaactctgagctgcccgtccagtccaggtgtcacatcatcactcagttc
aaccagggcttctacgactacatcatcgccacagatgaacagagtttggccgaccccgct
gctgctccactgccgacggcaggcaaagggaagaagaagaagaagaacacagacaaggga
ggaagggcgaaggacaaagagtatggagtctccagaggggtggacttccagaatgtttca
aatgtcatcaactttgatttccccatgactgtagaatcatacattcatcgagttgggaga
acggcccgagcagacaaccccggcaccgctctgtccttcatctctcacacggagattggt
gtgctatcagaggtggaggacgctctcacaggagatacgtctgattgtgttctaaaacca
tatgagtttaagatggacgagattgagggcttcaggtacaggtgcagggatgccatgcgt
tcagtgacaaagcaggcagtgaaggaggccagactgaaggagatcaaacaggagctgctc
aactcagaaaaactcaagacatattttgaggacaatcccagagacctgcagctgctcaga
cacgacaaagacctccatcctgctgtcatcaaaccccacctgaggaacgtgcccgactac
ctcattcccgagacactgaagggcgtcgtgaatccgctgtcaaacaggaggaagaagaag
aagatggtcaaatcaaaaccagatggggtcatcaagagcagcttcaagaacatccagggg
aagaacccactgaagagtttccgatacagcgccgggaggaacaggaaagacacaccagtc
aagtcctag

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Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (25)   

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