KEGG   Neurospora crassa: NCU00693
Entry
NCU00693          CDS       T01034                                 
Name
(RefSeq) exosome complex exonuclease RRP40
  KO
K03681  exosome complex component RRP40
Organism
ncr  Neurospora crassa
Pathway
ncr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ncr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NCU00693
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ncr03019]
    NCU00693
Messenger RNA biogenesis [BR:ncr03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     NCU00693
SSDB
Motif
Pfam: RRP40_S1 Rrp40_N KH_6 RRP4_S1
Other DBs
NCBI-GeneID: 3881895
NCBI-ProteinID: XP_965833
UniProt: Q7SHW1
Position
I:complement(7528370..7529952)
AA seq 246 aa
MSSESPLVVLPGETIDPSLIPTHKKNPLRLGPGLRHIPPSEIVPTVAGQLVVDHRKTSMW
IEYNGGRYIPSQGDLIIGQIARSATDFYYVSLSPYTPNATLPHLAFESATKKTRPQLASG
ELVYARVSLANRHMDPELECVNSSTGKADGLGPLKDGMVFDVSLGFARRLLMAKSREEGK
VEVLEALGEEGLAFETAVGRNGKVWVGSESVKTAVMVGRALRETDEKGLGVEAQRKLVKK
LVREMR
NT seq 741 nt   +upstreamnt  +downstreamnt
atgtcatcagaatcgcccctcgtcgtcctcccgggcgagaccatcgacccttccctcatc
cccacccacaagaagaaccctctccgtctcggccccgggttgcgacacatccctcctagc
gaaatcgtccccacggtagccggccagctagtagtcgaccatcgcaaaacttccatgtgg
atagaatacaatggcggacgctacataccctcccaaggcgacctcatcatcgggcaaatc
gcccgctccgccaccgacttctactacgtctccctctcgccctatacccccaacgccacc
ctcccgcacctcgccttcgagtcagccaccaagaaaacccgtccccaactggcgtcgggc
gagctcgtctacgcccgtgtgtctctggccaaccggcacatggaccccgagctggaatgc
gtcaactcttcgaccggcaaagcggacgggctgggccccttgaaggacggcatggtgttt
gatgtcagtcttgggtttgcgaggaggttgttgatggcgaaaagtagggaggagggcaaa
gtggaggttcttgaggcgctgggcgaggaagggttggcgtttgagacggcggtggggagg
aacgggaaggtgtgggtgggtagtgagagtgtcaagacggcggtgatggtgggcagggcg
ttgagggagacggatgagaagggactgggggtggaggcgcagaggaagttggtgaagaag
ctggttagggagatgcgttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (18)   

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