KEGG   Naumovozyma castellii: NCAS_0C01390
Entry
NCAS_0C01390      CDS       T02233                                 
Symbol
NCAS0C01390
Name
(RefSeq) hypothetical protein
  KO
K03144  transcription initiation factor TFIIH subunit 4
Organism
ncs  Naumovozyma castellii
Pathway
ncs03022  Basal transcription factors
ncs03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ncs00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    NCAS_0C01390 (NCAS0C01390)
  09124 Replication and repair
   03420 Nucleotide excision repair
    NCAS_0C01390 (NCAS0C01390)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ncs03021]
    NCAS_0C01390 (NCAS0C01390)
   03400 DNA repair and recombination proteins [BR:ncs03400]
    NCAS_0C01390 (NCAS0C01390)
Transcription machinery [BR:ncs03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     NCAS_0C01390 (NCAS0C01390)
DNA repair and recombination proteins [BR:ncs03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     NCAS_0C01390 (NCAS0C01390)
SSDB
Motif
Pfam: Tfb2 Tfb2_C Helicase_C_3 bPH_7
Other DBs
NCBI-GeneID: 11526399
NCBI-ProteinID: XP_003675496
UniProt: G0VCC0
Position
3:254415..255965
AA seq 516 aa
MSTSVLKNSVTQYLEEIPQQVQTRLYESPATCLAIYRLLPQLAKFFVMSMVFNDKEVSLR
DLDRWVKSNGKMQFQDAIKSMKSLHLIIPSKSNGGPLMINLNPTFRESFKNALTGGQVDN
SFGIVADDDDDNGVVSLQLLDEYSANKWETILHFMVGTPMSSIPSASVLNLLKHTRLMEE
VDHTSEFKITNEGFQFLLQELNSQIWTLLLQYLKMSETLKMDSVDVLNFIFMLGALEVGK
GYSIDGLSETQKIMLKDMRDYGLVFQKYTNSNLFYPTNLALMLTSDTKSIVRTASGALES
VLQNKREDSSKQANGEINKDLITNGDELDQVGYNPQDIPDGSLIIETNFKLYSYSNSPLQ
IATLSLFVHLKSRFANMVTGQITRESIRRALINGITADQIIAYLETHAHPQMRRLAEERL
EKKLELDPNSKDPLQVLPPTVVDQIKLWQLELDRVITYEGSLYSDFETIAEYTTLSKYAQ
DIGVLLWKDDKKKKFFVSKEGNSQVLDYAKRKLKKK
NT seq 1551 nt   +upstreamnt  +downstreamnt
atgagtaccagtgtattgaagaattcggttacccaatacttggaggaaattccacaacag
gtgcaaactagactttatgaatcaccagcaacgtgtttggccatttatagattactgcct
caactagctaaatttttcgtcatgtctatggttttcaatgataaagaagtctctttacgt
gatttagatagatgggtgaagtctaatgggaaaatgcaattccaagatgctatcaaatcc
atgaaatcattacatttgatcataccttcgaaaagtaacggaggtcccttaatgattaac
ttaaatccaacattcagggagagctttaagaacgcattgacaggtggtcaggtggataat
tcatttggtatagtagcagatgatgacgatgataatggagttgtttcattacaattattg
gatgagtattctgcaaataaatgggagacaattttacattttatggtggggactcccatg
tcaagcataccatcggcaagtgttttaaacctattgaaacatacaagactgatggaagaa
gtagatcatactagtgaattcaaaattaccaatgaagggtttcaattcctgttacaagaa
ttgaactctcaaatttggactttattattgcagtatttgaaaatgtctgaaacgttaaag
atggattctgtggatgttttgaactttatttttatgttaggtgcattagaagttgggaag
gggtacagcatagatggtctaagtgaaacgcaaaagataatgttgaaagatatgagagat
tatgggctggttttccaaaaatatacaaattcgaatttattctatcctaccaatttggct
ttgatgctaacatcagacactaagagtatagtgagaaccgcgtctggtgcactggagagt
gttttacaaaacaagagagaagacagtagcaaacaagcaaacggtgaaattaataaagat
cttattaccaatggagatgaactagatcaagttggatacaacccacaggatataccagat
ggctctcttattatagaaactaattttaaattgtattcgtattccaattcgccattgcaa
atagctaccctgagtttattcgttcatttaaaatctagatttgcaaatatggtgacgggt
caaataacaagagaatccattagacgagcattgattaacggtattaccgcggaccaaatt
atagcgtacctggaaactcatgcacatccacagatgaggaggttggctgaagagagactg
gagaaaaagttagagctggacccaaactctaaggatccgttacaagtgctgcctccaact
gtggttgatcaaattaaactatggcaattagaattagatagagttatcacctatgaggga
tcgttgtattcagattttgaaactatcgctgaatataccacactcagtaaatatgcccag
gatatcggtgttctgctgtggaaagatgacaagaagaagaagttcttcgtttccaaggag
ggaaattcacaagtcttggattatgctaagagaaagctaaagaagaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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