KEGG   Candidatus Nitrosomarinus catalina: NMSP_0595
Entry
NMSP_0595         CDS       T04846                                 
Symbol
lig
Name
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
nct  Candidatus Nitrosomarinus catalina
Pathway
nct03030  DNA replication
nct03410  Base excision repair
nct03420  Nucleotide excision repair
nct03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:nct00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NMSP_0595 (lig)
   03410 Base excision repair
    NMSP_0595 (lig)
   03420 Nucleotide excision repair
    NMSP_0595 (lig)
   03430 Mismatch repair
    NMSP_0595 (lig)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:nct03032]
    NMSP_0595 (lig)
   03400 DNA repair and recombination proteins [BR:nct03400]
    NMSP_0595 (lig)
Enzymes [BR:nct01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     NMSP_0595 (lig)
    6.5.1.6  DNA ligase (ATP or NAD+)
     NMSP_0595 (lig)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     NMSP_0595 (lig)
DNA replication proteins [BR:nct03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    NMSP_0595 (lig)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     NMSP_0595 (lig)
DNA repair and recombination proteins [BR:nct03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     NMSP_0595 (lig)
   NER (nucleotide excision repair)
    Other NER factors
     NMSP_0595 (lig)
   MMR (mismatch excision repair)
    Other MMR factors
     NMSP_0595 (lig)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: ARS64216
UniProt: A0A2Z2HN22
Position
complement(492918..494684)
AA seq 588 aa
MEYSILADSFEKMESTRKRLELTQMLVELFEKTPQEVISKIVYLIQGKLRPDFEGIELGV
AEKLAIRAVSKSSGIAIKKIEDEYTKGGDLGHAAAVILEQKTQTTFLVENITVERVYETL
FKIAKLEGSRSQDMKIKYISSLLNDANPLEASFILKILLGTLRLGIAENTVMDALAIAYS
GNKENRKLLQNAYNVSSDLGKVAETIALEGIQGIEKFKVNLFNPIRPMLADRVKSEKEVI
EKMGEEFAIEYKLDGERVQLHIEGDKIELFSRSLEKISSYYPDIIEKIPKMVKAEDAIME
AEIVAINENTGDFLPFQELMHRRRKYKIEKAVSEYPITVNFFDVLYCNGKDCTDLNYIER
RRKLENIVQENEFAKFIPMTLAKNENEIEEFFENSINAGSEGLMLKMLDKPYQAGSRGSH
WLKLKREYRNELGDSLDLVVVGGFFGKGRRTGSYGTLLLSTYDENTDTFPSICKVGTGFT
DESLDQLYQILSPKTTIKKNPRINSEMDADVWFEPELVIEIVASEITLSPIHKVARDEIR
KDTGLALRFPKFTGKIRVEKMAEDASTDDEVISLYKGQNKAAHDKNLI
NT seq 1767 nt   +upstreamnt  +downstreamnt
atggaatattctattttagctgattcttttgaaaaaatggagtcaacaagaaaaagatta
gagttaacacagatgctagtagaattatttgaaaaaacaccacaagaggtaatttcaaaa
atagtttatctcattcaaggaaaattaagaccagactttgaaggaattgaattaggagtt
gcagaaaaattagcaatccgagcagtttctaaatcatcaggtattgcaattaaaaaaatt
gaagatgaatatacaaaaggaggagatttagggcatgctgcagctgtaattttagagcaa
aaaacacaaacaacatttcttgttgaaaatatcacagttgaaagagtgtatgaaacatta
ttcaaaattgcaaaattggaaggatcaagatctcaagatatgaaaataaaatatatttca
agtttgttaaatgatgcaaatccattagaggcaagtttcattttgaagattttattgggc
actctaagattaggcatagcagaaaatacagtaatggatgcattagcaattgcatattct
ggaaataaagaaaatagaaaattattacaaaatgcatacaatgtttcaagtgatttagga
aaagtagcagagacaattgcattagaaggaattcaaggaattgaaaaattcaaagtgaat
ttatttaatccaattcgtccaatgcttgcagacagagtgaaaagtgaaaaagaagtaatt
gaaaaaatgggagaagagtttgcaatagaatacaaattagatggagaaagagttcaactt
cacatcgaaggagataaaatagaattattctcaagaagtttagaaaaaatttcaagttac
tacccagacataattgaaaaaattccaaagatggtaaaagcagaagatgcaattatggaa
gcagagattgtagcaattaatgaaaacacaggagattttttaccatttcaagagttaatg
catagaagaagaaaatataaaattgaaaaagcagtttcagaatatccaattacagtaaat
ttttttgatgtactctattgtaatggaaaagattgtacagatttgaattacattgaaaga
agaagaaaattagaaaacattgttcaagaaaatgaatttgcaaaatttattccaatgact
ttagcaaaaaatgaaaatgaaattgaagaattttttgaaaacagcattaatgcaggaagt
gaaggattgatgttgaagatgctagacaaaccatatcaagcaggttcaagaggaagtcac
tggttgaaattaaaaagagaatatagaaatgaattaggagatagtttagatcttgtagtg
gtaggaggattttttggaaaaggaagaagaacaggcagttatggaacactattgctttca
acatatgatgagaatacagatacatttccaagcatatgtaaagttggaacagggtttacg
gatgaaagtttagatcaattatatcaaattcttagtccaaaaaccaccatcaaaaaaaat
cctagaatcaatagtgagatggatgcagatgtatggtttgaaccagaattggttattgaa
attgtagcatcagaaattacattgagtccaattcacaaagttgcacgtgatgaaataaga
aaggatacaggactagcactgagatttccaaaatttacaggaaaaattagagttgagaag
atggcagaagatgcatcaacagatgacgaagtaatttcactctacaaagggcagaataaa
gctgcacatgataaaaatttaatctaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (11)   
   KEGG COMPOUND (11)   
Chemical reaction (7)   
   KEGG ENZYME (3)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (79)   
   KEGG ORTHOLOGY (1)   
   RefGene (76)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (111)   

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