KEGG   Nitrospira defluvii: NIDE0302
Entry
NIDE0302          CDS       T01281                                 
Symbol
yliG
Name
(GenBank) putative tRNA modifying enzyme, MiaB-like
  KO
K14441  ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
Organism
nde  Nitrospira defluvii
Brite
KEGG Orthology (KO) [BR:nde00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:nde03009]
    NIDE0302 (yliG)
Enzymes [BR:nde01000]
 2. Transferases
  2.8  Transferring sulfur-containing groups
   2.8.4  Transferring alkylthio groups
    2.8.4.4  [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
     NIDE0302 (yliG)
Ribosome biogenesis [BR:nde03009]
 Prokaryotic type
  ribosomal protein modification factors
   NIDE0302 (yliG)
SSDB
Motif
Pfam: UPF0004 Radical_SAM TRAM_2 TRAM CLP1_P
Other DBs
NCBI-ProteinID: CBK40082
UniProt: D8PA23
Position
265928..267382
AA seq 484 aa
MASSLITPSRAKRDKPTIGFVNLGCSKNQVDSEVMLGTLVAGGFQLTGDARAAEVVIINT
CGFIEEAKQESINSIIEHGRLKKSGSCRVLIAAGCLAQRYQGELLKELPELDGVVGTGEF
GRIAEICRSLLAPKARQQRLWIGQPPYLYDAETPRIRLGTPHSAYLKIAEGCNRNCAFCA
IPIMRGKQRSRPIESIVAEAGRLVQEGVKELNLISQDTINYGVDLGLKQGLTALLRELVT
VKDVRWIRPFYLYPQQVTDELLDLYAGEARITKYLDMPLQHISDGMLKRMHRLGDRKHVT
QLVERIRAKIPGVFFRTAFIVGFPGETDAMFEELKQFILDMEFDRVAVFLYSDEEGTSAV
DLDRKVDLAVMEERRNELLALQESISEAKNRAYLGRTMEVLVDGISEESDRLLECRHEGL
APEIDGVVFCDRNAAKPGEFVSVTITDVAGYDLIAQPVSRADAPTAAPAVPTLLMPKKSG
AGYR
NT seq 1455 nt   +upstreamnt  +downstreamnt
atggcctcgtcattgattaccccgtcacgcgcgaaacgcgacaaacccacgatcggtttt
gtgaacctcggttgttcaaagaaccaggtggactcagaagtcatgctcggtacattggtc
gccggaggcttccaactcacgggcgacgcgcgcgccgcggaagtcgttatcatcaatacc
tgcggctttatcgaggaagccaagcaggaatcgatcaacagcatcatcgaacatgggcgg
ttgaagaagtccggatcctgccgcgtcctgattgccgcgggatgcctggcccagcggtac
cagggcgaactgttgaaagagttgcctgagttggacggcgtcgtgggaacgggcgagttc
gggcgcattgcggagatctgccgcagtttgctggcgccgaaagctcgtcagcagcgactc
tggatcggacaaccgccctatctgtacgatgccgagactccacgcattcgcctcggaact
ccccacagcgcctacctgaaaattgccgaaggctgtaaccggaactgcgcgttctgtgcg
attcccatcatgcggggcaagcagcgcagccgcccgattgagtcgattgtggctgaggcc
ggacggttggttcaggaaggggtgaaggaactcaacctgatttcgcaggacacgatcaac
tacggggtggaccttggattgaagcaggggctcacggcgttgcttcgggaactggtaacg
gtgaaggatgtgcgctggatccggcccttctatctatacccgcaacaggtgacggatgag
ttgctggatctgtatgccggagaggcgcgtatcaccaagtatctcgacatgccgttgcag
catatcagcgacggcatgctgaagcggatgcaccgattgggagaccgcaaacacgtcact
cagctggttgaacgtatccgcgccaagattcccggcgtctttttcaggacggcgtttatc
gtcgggtttcccggtgagaccgatgccatgttcgaggaactgaagcaattcatcctcgat
atggaattcgatcgcgtggcggtgtttctctattctgatgaagaaggcacatcggccgtc
gatctcgaccggaaagtcgacctggcggtaatggaagagcggcgcaacgagctgctggct
ctgcaggagtccatctcagaagccaagaatcgtgcctatctcggccgcacgatggaggtc
cttgtggatgggatctcagaagaatctgaccggctgcttgaatgcaggcacgaagggttg
gcgcctgagattgacggggtggttttctgtgatcgcaacgcggcgaagccgggtgagttt
gtttcggtcaccatcaccgatgtggccggatatgatctcattgcccagccggttagccgg
gccgacgcgccgactgctgcgcccgctgttccgactctcctcatgcccaaaaaatccggg
gcaggctaccgataa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (9)   
   KEGG COMPOUND (9)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (27)   

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