KEGG   Nitrospira defluvii: NIDE2036
Entry
NIDE2036          CDS       T01281                                 
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+))
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
nde  Nitrospira defluvii
Pathway
nde03030  DNA replication
nde03410  Base excision repair
nde03420  Nucleotide excision repair
nde03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:nde00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NIDE2036 (ligA)
   03410 Base excision repair
    NIDE2036 (ligA)
   03420 Nucleotide excision repair
    NIDE2036 (ligA)
   03430 Mismatch repair
    NIDE2036 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:nde03032]
    NIDE2036 (ligA)
   03400 DNA repair and recombination proteins [BR:nde03400]
    NIDE2036 (ligA)
Enzymes [BR:nde01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     NIDE2036 (ligA)
DNA replication proteins [BR:nde03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     NIDE2036 (ligA)
DNA repair and recombination proteins [BR:nde03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     NIDE2036 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     NIDE2036 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     NIDE2036 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      NIDE2036 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 PTCB-BRCT DNA_ligase_ZBD BRCT_2
Other DBs
NCBI-ProteinID: CBK41756
UniProt: D8PEU7
Position
complement(1953279..1955306)
AA seq 675 aa
MSNQPMPHQTAEQRIADLRRQIRHHDHLYYTKDRPEISDAEYDRLFRELVDLETAHPDLV
TGDSPTQRVGAPPLDELTKVSHEKPMLSLDSITDQDDVRAFDARMKRELETDQIVYTAEP
KFDGLSVELVYDRGAFVRGATRGDGMVGEDVTINLRTIRALPLQLDPQPSLPAHLVVRGE
VYMRLDEFQVLNRRMTERGEEAFANPRNAAAGSLRQLDSRITASRPLTLTCYDIMAISGT
APPTHWDELDALAAWGLPVPEHRQRCRSIDEVLSFQQATDAMRDSLPFEIDGVVVKLDRR
TWQDQLGSKSRSPRWAIAYKFAPRKEITVIQDIAVSVGRTGTLTPLALLKPVEVGGVTIS
RATLHNADEVARKDVRVGDTVKVERAGDVIPAIAERVPVPGETRQEPFVMPDHCPVCGSA
VAREGAYFYCTGQTVCVAQLKGAIEHFASKSALDIDGMGKKTIAQLVDVGLVRDLADLYS
LTKDQILTLEGFADRSANLLLESIERSKSVSLDRLLMGLGIRQVGQHIARVLAKQFGTLS
KLMSATQEDLLQVREIGPEISASLTSFFSEERNRAVIARLIERGLTIAPPTTENTTGSQH
LAGKTFVFTGGLEGYSRDQAKELVEQQGGQVSSSVSKKASFVVAGTDPGSKLDQAQKLGV
RILTEAEFTALVRPE
NT seq 2028 nt   +upstreamnt  +downstreamnt
gtgagtaatcagcccatgcctcatcagacagccgaacaacgaatcgccgatcttcgccgt
caaattcgccatcacgaccacctctactacacgaaggaccggccggagatttccgacgcg
gaatacgaccggctctttcgcgagctcgtcgacctcgaaaccgcccatcccgacctggtc
accggcgactcgcccacccaacgagtcggcgcaccaccgctggacgaactcaccaaagtc
tcccacgagaaaccgatgctgagtctcgactccatcaccgatcaggacgatgtccgggcc
ttcgatgcacggatgaagcgggagctggaaaccgaccagatcgtctacacggcggagccg
aaattcgatggcctgtcggtggaactggtttacgaccggggcgccttcgtccgcggcgcg
actcgtggagacggtatggtcggcgaagatgtgacgatcaatctccggacgatccgcgcc
ctgccgctacagcttgatccccagccctccctgcccgcgcacctggtcgtgcgcggagaa
gtctacatgcgtctggatgaatttcaggtgctcaaccgtcgcatgacggagcgcggcgag
gaagcctttgcgaacccgcgcaatgccgcagcaggatcgttgcgccagttggacagccgc
atcaccgcatctcgccccttgaccttgacctgctatgacatcatggcgatatccggcaca
gccccccccacccattgggatgagttggacgcactggccgcctgggggcttcctgttccc
gaacaccgacaacggtgccgctcgattgacgaagtcctctcgttccaacaggccaccgat
gcgatgcgggactcgcttccgtttgaaatcgacggcgtggtcgtcaaactcgaccgccgg
acgtggcaggaccagttgggcagcaaatcccgcagcccccgttgggccatcgcctacaag
tttgcaccccgcaaagaaatcacggtgattcaagacatcgccgtctcggtcggtcgtacc
ggtaccctgacgccgttggccctgctgaaaccggtagaggtcggaggcgtcacgatcagt
cgtgcgactcttcacaatgcggatgaggtggcgcgaaaagacgtccgcgtcggtgacacg
gtcaaggtggaacgcgccggtgacgtgatccccgcgattgccgaacgggtcccggttccc
ggagagacgagacaggaaccgttcgtgatgccggaccactgcccggtctgcggatcggct
gtggctcgcgagggagcttatttctactgcaccggccagaccgtctgcgtcgcgcaactg
aagggcgccatcgaacacttcgcctcgaagagcgcgttggatatcgacgggatgggaaag
aaaacgatcgcccaactggtcgatgtggggttggttcgggacctggccgatctctacagc
ctcaccaaagaccagatactcacgctggagggctttgccgaccgttcggcgaacctgctg
ctggaatcgattgaacgaagcaaatccgtctcactggaccggctgttgatggggctgggc
atcagacaggtggggcagcatatcgcccgcgtgctggcgaaacagttcggcaccctctcg
aagctgatgtcggcgacgcaggaggacttgctgcaggtgcgcgaaatcggcccggagatt
tctgccagcctcacgtcgttcttcagcgaagaacggaaccgggccgtgattgcccgcctg
atcgaacggggtctgacgattgctcccccgaccactgagaacaccaccggcagccaacat
ctggccggtaagacattcgtttttaccggtgggctcgaaggctacagccgcgaccaagcc
aaagaattggtggaacagcaggggggacaagtctcgtcgagcgtcagcaaaaaggcatcg
tttgttgtggcagggaccgatccggggtcgaaactcgaccaggcacagaaactgggggtg
cggattctgacggaagcggaatttaccgctctagtgaggcctgagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (38)   
   KEGG ORTHOLOGY (1)   
   RefGene (35)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (63)   

Download RDF
DBGET integrated database retrieval system