KEGG   Nitrospira defluvii: NIDE2582
Entry
NIDE2582          CDS       T01281                                 
Symbol
dnaE2
Name
(GenBank) DNA polymerase III, alpha subunit
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
nde  Nitrospira defluvii
Pathway
nde03030  DNA replication
nde03430  Mismatch repair
nde03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:nde00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NIDE2582 (dnaE2)
   03430 Mismatch repair
    NIDE2582 (dnaE2)
   03440 Homologous recombination
    NIDE2582 (dnaE2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:nde03032]
    NIDE2582 (dnaE2)
   03400 DNA repair and recombination proteins [BR:nde03400]
    NIDE2582 (dnaE2)
Enzymes [BR:nde01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     NIDE2582 (dnaE2)
DNA replication proteins [BR:nde03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     NIDE2582 (dnaE2)
DNA repair and recombination proteins [BR:nde03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     NIDE2582 (dnaE2)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon HHH_3
Other DBs
NCBI-ProteinID: CBK42289
UniProt: D8PGA2
Position
2526496..2529948
AA seq 1150 aa
MASQFVHLHLHTQYSLLDGANQIDPLMQQVKSFGQPAVAMTDHGNMFGAVEFYRKAKEAG
VKPIIGCEAYMAPGSRLEKNSHLAHNDYYHLILLATNLKGYQNLIKLVSKAYLEGFYYKP
RMDKEILQQHHEGLIGLSGCLSGEVAYLIGQKDLAGATKAAGEYREIFGKDNYYLELQAN
GLEHQRIANDGLLEIHKKLDIPLAGTNDCHYLKKEDSRPHDLMLCLQTGKTINDPNRMKF
DTDQLYVKSTEQALSEFKEMPTAVSNTVKIAEACTLDLALNKTYLPQFKVPEGYTRESYV
EQLALEGLAARLKERPSSIPEIAYQVRLKEEVAVICSMGFAGYFLIVWDIIKFARSRGIP
VGPGRGSAAGSLVAYALRITDLDPLVYSLLFERFLNPERVSLPDIDMDFCMDRRDEVINY
VIHKYGEDHVAQIITFGTMKAKAAIRDVGRVLEMPYAEVDRIAKLVPDDLKMTLDKALEQ
EPRLKELVDKDVKVKELMSVAQSLEGLARHASTHAAGIVISDQPLTEHVPLYKGPKDEIV
TQYSMGDVEKIGLVKFDFLGLKTLTMIHRAETLVNEVHPDQPPLRVEQLPFDDPDTFALL
SSGKTTGVFQLESSGMRDLLMGLKPDRFEDIIAIIALYRPGPMDLIPDFIKRKQGKIPIA
YEMPELEPILKDTYGVIVYQEQVMAIANKVAGFSLGQADILRRAMGKKKPEEMEKLRVQF
LEGAKQKKISEKKADKLYELIQKFAGYGFNKSHAAAYAVVCYQTAYLKAHYPTEFMAALM
TTDMGNADKIVGYFTECRGLGIPVLPPDVNQSQKNFAVVDQSIRFGLAAIKNVGEGAVEA
IIEVRNETGPFRSFFDLFRRVDLRKLNKRMMEGLIKAGAFDSMGGRRSQYLAVLDQAMDE
GMSIQKERALGQTSIFGDDTVGMPQQLDEPALPDVPEWNQGELLKYERELTGFYISAHPL
ARYEAAIQLFANTTTMQIPDVPDGREVKLCGIITAVKSMLTKKGDRMAYITLEDLHGLVE
VIAFPDLYRDHADMIVPERVVRLTGTVDRGDKGTKLRGTKIEPLADLQNTGISRVMIRLH
DGPTASTRLPMLRQVFQKYPGASSVSLVMALGGTMEARTSPLPNVKITPSEHFVADIEEV
LGKGAITLVT
NT seq 3453 nt   +upstreamnt  +downstreamnt
gtggcatcacaattcgttcatctgcatctccatacccaatacagcctcctcgacggcgcc
aatcagatcgatcccctgatgcaacaggtgaagtcgttcgggcaaccggccgtcgcgatg
accgatcacggcaacatgttcggggcggtggagttctaccggaaggcgaaggaagccggg
gtcaaacccatcatcgggtgcgaagcctacatggcgccgggcagccgcctggagaagaac
tctcacctcgcgcacaatgactactaccacctgattttgctcgcgacaaacctcaaggga
taccagaacttaatcaagttggtgagcaaagcgtatcttgaaggtttctactataagcct
cggatggacaaggaaattcttcagcagcaccatgaaggattaatcggcctctcaggctgt
ctcagcggcgaggttgcgtacctcatcggacagaaggatctggcgggtgccaccaaggcg
gccggtgagtatcgggagattttcggcaaggacaattattacctggaactccaagccaac
gggttggagcatcagcgcatcgccaacgacggcctgctggagatccataagaaactcgac
atcccgctcgccggcaccaacgattgccactacctgaagaaggaagactcccgcccgcac
gacctcatgctgtgcttgcagaccggcaagacgatcaacgatcccaaccgcatgaagttc
gatacggaccagctctacgtcaaatcgaccgagcaggccttgtctgagttcaaagaaatg
ccgacggccgtctcgaacaccgtgaagatcgccgaagcctgtaccctcgacctggcgctc
aataagacctacctgccccagttcaaagtgcccgagggctacacccgcgaatcctatgtg
gagcagctggccctggaaggattggcggcgcgtctcaaggaacggccgagctccattccc
gagatcgcctaccaggtccgactgaaagaagaagtcgcggtgatctgctcgatgggattc
gccggctactttctcatcgtctgggacatcatcaagttcgcccgctcgcgcggcattccg
gtcgggcccggacgcggctccgccgccggcagcctcgtcgcctatgccctgcgcatcacc
gatctcgatccgctcgtgtattccttgctcttcgagcgattcctgaatcctgagcgtgtg
tccctccccgacatcgacatggacttctgcatggatcgccgggatgaagtcatcaactac
gtgatccataaatacggcgaagaccacgttgcgcagatcatcacgttcgggacgatgaag
gccaaggccgccattcgagacgtgggccgcgtgctcgaaatgccctacgccgaagtggat
cggattgcgaagctcgtcccggacgatttgaagatgacgctcgacaaggcgctcgaacag
gagccgcgcctgaaggaactggtcgataaagatgtgaaggtgaaggaactcatgtcggtg
gcgcagtcgctcgaaggcctcgcccgccatgcgtccacccacgcggccggtatcgtgatc
tccgatcagccgctcaccgaacacgtgccgctctacaaaggccccaaggacgaaatcgtc
acccagtattcaatgggggatgtcgaaaaaatcggcctggtgaagttcgacttcctcggg
ctgaaaacgctcaccatgattcatcgcgcggaaacgctggtcaacgaggtgcaccccgat
cagcctcccctgcgcgtcgagcaattgccgttcgacgatcccgacacgttcgcgctgctg
tcgtccggaaaaaccaccggcgtcttccagctcgaaagttccggcatgcgcgatctctta
atgggcttgaagcccgaccggttcgaagacatcatcgccatcatcgcgctctatcgcccc
ggcccgatggacctcattccggacttcatcaaacgcaagcagggcaagattccgatcgcc
tacgagatgcccgagctcgagccgatcctgaaggacacgtacggcgtcatcgtgtaccag
gaacaggtcatggccatcgccaacaaggtggcaggcttctcgctgggacaagcggatatt
ctccgtcgcgccatgggcaaaaagaagcccgaggagatggagaagctccgcgtccaattc
ctggaaggcgcgaaacagaaaaaaatatctgagaagaaggccgacaaactctacgaactt
atccagaagtttgccggatacggcttcaacaaatcgcacgccgccgcctacgcggtggtc
tgttaccagacggcctatctcaaagcccactaccccaccgagttcatggcggcgctgatg
accaccgacatgggcaacgccgacaagatcgtcggttacttcaccgaatgtcgcgggctc
ggcattccggtcctgcccccggacgtgaaccagagccagaagaatttcgccgtcgtggat
cagagcatccgcttcgggctcgcggcgatcaagaatgtcggcgaaggcgcggtcgaagcc
attatcgaagtacgcaacgaaaccggccccttccgctcttttttcgacctctttcgccgg
gtcgatttgcgcaagttgaacaaacgcatgatggaagggttgatcaaggcgggggccttc
gattccatgggcggacggcgatcgcaatatctggccgtgctcgaccaggccatggacgaa
gggatgagcattcagaaagagcgcgcgctcggccagaccagcatcttcggcgacgacacg
gtcggcatgccgcagcaactggacgaaccggccctgcccgacgtgcccgagtggaaccag
ggcgagctgttgaaatacgagcgtgagttgaccggcttctacatcagcgcccatccgttg
gcccggtacgaagccgcgatccaattgttcgccaacaccacgaccatgcagatccccgat
gtgccggacggacgcgaggtcaaactctgcgggatcatcacggcggtgaaatccatgctc
accaaaaagggcgaccgcatggcctacatcacgctggaggatttacatgggctggtagaa
gtgatagccttccccgacctgtatcgagaccatgccgacatgattgtgccggaacgggtc
gtgcgattgacgggcaccgtggatcgcggagacaaaggcaccaagttgcgcgggaccaag
atcgaaccgctggctgatttacagaacacagggatttcgcgggtgatgattcgcctgcac
gacggaccgaccgcttccaccagactgccgatgctccggcaggtattccaaaaatatccc
ggtgcctcgagcgtctctctggtcatggccctcggcggcacgatggaagcgcggacctct
cccctccccaacgtcaagatcacgcccagcgagcatttcgtcgccgatattgaggaagtg
ctaggcaagggcgccatcactttggtaacctag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (51)   
   KEGG ORTHOLOGY (1)   
   RefGene (48)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (67)   

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