KEGG   Candidatus Nitrososphaera evergladensis: NTE_02196
Entry
NTE_02196         CDS       T03224                                 
Name
(GenBank) ATP-dependent DNA ligase I
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
nev  Candidatus Nitrososphaera evergladensis
Pathway
nev03030  DNA replication
nev03410  Base excision repair
nev03420  Nucleotide excision repair
nev03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:nev00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NTE_02196
   03410 Base excision repair
    NTE_02196
   03420 Nucleotide excision repair
    NTE_02196
   03430 Mismatch repair
    NTE_02196
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:nev03032]
    NTE_02196
   03400 DNA repair and recombination proteins [BR:nev03400]
    NTE_02196
Enzymes [BR:nev01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     NTE_02196
    6.5.1.6  DNA ligase (ATP or NAD+)
     NTE_02196
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     NTE_02196
DNA replication proteins [BR:nev03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    NTE_02196
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     NTE_02196
DNA repair and recombination proteins [BR:nev03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     NTE_02196
   NER (nucleotide excision repair)
    Other NER factors
     NTE_02196
   MMR (mismatch excision repair)
    Other MMR factors
     NTE_02196
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: AIF84250
UniProt: A0A075MSW0
Position
1799258..1801078
AA seq 606 aa
MDFQPLVETFGKMEETSSRLALTDHLVALLKETPADLIDKVTYLIQGKLYPDYEGIEMGL
AERMALRAIASSSSRSMSEVEAIYRKKGDIGDAAREAMESKGQSTLFSEQMTVERVYCTF
DKIAKTTGPGSQETKLRLVASLLNDSTPDEGRYIMKFVMGALRLGIADYTVLDALAIAFT
GDKANRKVLENAYNVSSDLGTVAKLLATKGLAAVKAVQITLFKPIRPMLAERVSTAEEAM
ERMDSRAAIEYKLDGERVQIHKGRDRVELFSRRLEKITDHYPDVSKAAMSLACKEAIMEG
EVVAVNLQTGEYLPFQQLMHRRRKHGIEEAMENYPVVINLFDILYLDGKSRTELPYEERR
KLLEKTVKGAKDNGIMLKIVPQVVATEPAEIDRFMASAIENGCEGVMVKMPSSTYRAGAR
EYLWVKLKREYRTELADTLDLVIVGALHGRGRRVGKYGALLLAAYDPKEDIFRSVTKVGT
GFTDIHLDQFYRELEKHVIHQKHARVDTGMSMEVWFEPVIVIEVIASEITLSPSHMAAMD
AIKEGYGLALRFPKFTGKIRDDKEPEGATTTDEIVTMYRRQLKIHSEAAKSKEQEKKKKE
SEEGEE
NT seq 1821 nt   +upstreamnt  +downstreamnt
gtggatttccagcctctggtagagacgtttggcaagatggaggagacgtccagcaggctg
gcccttaccgatcacttggttgcactgttgaaagagacgccggcggacctgatagacaag
gtgacgtacctcatacagggcaaattatatccagactatgaaggcatagagatgggcctt
gcagagcgcatggcgctccgggcaatagcaagctcgtcaagcaggagcatgtccgaagtt
gaagcgatttaccgtaagaaaggcgacattggagacgccgcacgcgaggcgatggagtca
aagggccagtcgacgctgttttcagagcagatgacggtagagcgcgtctattgcactttt
gataagattgccaagacgactggccccgggtcgcaggaaacgaaactgcgccttgtcgca
agcctgctcaacgactctacgccggacgaggggcgctacatcatgaagtttgtcatggga
gcgctcaggcttggcatagcagattacactgtgcttgacgcgcttgccattgcgtttacc
ggcgacaaggcaaacagaaaagttctggagaacgcctacaacgtttcaagcgaccttggc
acggttgcaaagctgcttgcgacaaaaggtcttgccgcagtcaaggcggtgcagataacc
ctgttcaagcccatcaggccgatgcttgccgagcgcgtttccaccgctgaagaggcgatg
gagcgcatggacagccgcgcggcaatagaatacaagctggacggcgagcgggtccagatc
cacaaaggcagagaccgcgtcgagcttttttcacgcaggctggaaaagataaccgaccac
tacccagacgtcagcaaggcggcaatgtcgcttgcctgcaaggaggcaataatggaggga
gaggtcgtggcggtaaacctgcagacgggggaatacctgccgtttcagcagctgatgcac
cgaaggcgcaagcacggaatcgaagaggctatggaaaactaccctgtggtcatcaacctt
tttgacatcctctaccttgatggcaagagcaggactgaactgccgtacgaagaacgccgc
aagctcttggaaaagacagtcaaaggcgccaaggacaacgggataatgctgaaaatagtg
ccgcaggtcgttgctacagagccggcagaaatagaccggtttatggcctctgcgatagag
aacggctgcgaaggcgtcatggtaaagatgccgtcaagcacgtaccgcgcaggagcccgc
gagtacctgtgggtgaaactaaagcgcgaatacagaacagaacttgcagacacgcttgac
cttgtcatcgtaggcgcgctgcacggtcggggaaggcgcgtgggcaagtacggcgccctg
cttttggcggcgtacgacccaaaggaggatattttccgtagcgtgacaaaggtggggacc
ggatttactgacatacaccttgaccagttttaccgcgagctggaaaagcacgtgatacac
caaaagcacgcccgagtggacacgggcatgagcatggaagtttggtttgagcctgtgatt
gttattgaagtcattgcgtcggaaattaccctgagcccgtcgcacatggcggcgatggat
gccataaaggaaggctatggcctcgcactgcggttccccaagttcacagggaaaatccgc
gacgacaaagagcccgagggcgcaaccaccactgacgagattgtgaccatgtaccggcgc
cagctaaagatccactcggaagctgccaagtcaaaagagcaagagaaaaagaaaaaggaa
agtgaagaaggagaagaatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (11)   
   KEGG COMPOUND (11)   
Chemical reaction (7)   
   KEGG ENZYME (3)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (35)   

Download RDF
DBGET integrated database retrieval system