KEGG   Nothobranchius furzeri (turquoise killifish): 107380123
Entry
107380123         CDS       T05163                                 
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
  KO
K07466  replication factor A1
Organism
nfu  Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03030  DNA replication
nfu03420  Nucleotide excision repair
nfu03430  Mismatch repair
nfu03440  Homologous recombination
nfu03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:nfu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    107380123 (rpa1)
   03420 Nucleotide excision repair
    107380123 (rpa1)
   03430 Mismatch repair
    107380123 (rpa1)
   03440 Homologous recombination
    107380123 (rpa1)
   03460 Fanconi anemia pathway
    107380123 (rpa1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:nfu03000]
    107380123 (rpa1)
   03032 DNA replication proteins [BR:nfu03032]
    107380123 (rpa1)
   03400 DNA repair and recombination proteins [BR:nfu03400]
    107380123 (rpa1)
Transcription factors [BR:nfu03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    107380123 (rpa1)
DNA replication proteins [BR:nfu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    107380123 (rpa1)
DNA repair and recombination proteins [BR:nfu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     107380123 (rpa1)
   MMR (mismatch excision repair)
     107380123 (rpa1)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     107380123 (rpa1)
SSDB
Motif
Pfam: Rep_fac-A_C REPA_OB_2 Rep-A_N tRNA_anti-codon DUF5521 Pox_vIL-18BP
Other DBs
NCBI-GeneID: 107380123
NCBI-ProteinID: XP_015806683
UniProt: A0A1A7ZKK7
Position
sgr06:complement(14910076..14934775)
AA seq 604 aa
MPKLSEGAIEALANGSGWNDAVLQLVNIRKIEGGSGIPRFRVMMSDGRHTLSSFMLSTQL
NYLAEENILAPNCVCILKKHVTNILKDGRRVVIILETELIKPAEEVSGKIGDPTPYFDGQ
NKGQQSGPVPAAPGPEVRPPLQAQNKNDVNIGFSRDFAKKAPSVMPDTPGGSSKVVPIAS
LNPYQSKWTIRARVTNKSSIRTWSNSRGEGKLFSMEIVDESGEIRVTAFTQEVDKFFPLI
EVGKVYYISKGSLKIANKQYTSVKNDYEMTLNGETSIVPCEDSCDVPTVQCDFVSIAELE
NRDKDAIVDVIGVCKSVDEMTRLTTKNNREVSKRTLSLMDMSGKLVTVTLWGEEAEKFDG
SGQPIVAIKAAKLSDFGGRSLSASFSSTLMVNPDIPEAYKLRGWFDKEGHAMDGQSLTET
KGSGGGSTNWKTLSDVKNEHLGHGEKADYYTCIATVVFLRKENCLYQACPTQDCNKKVVD
QHNGMFRCEKCDKDFPNFKYRLILSANIADYTDNQWVTCFQESAEAILGQNAAYLGQLRD
SSEAALDEVFQQSNFNTFVFRNRVKLETYNDESRVKATVFDVKPVDHRDYSKRLIINIRS
MAVK
NT seq 1815 nt   +upstreamnt  +downstreamnt
atgcctaaactttcagaaggcgcgattgaggctttagctaatggctccggttggaatgac
gcagttcttcagctggtgaacattcgcaaaatagagggaggaagtgggatacctcgcttt
cgggtgatgatgagtgatggacgccacacactgtcatcctttatgctttccactcagttg
aactacttggctgaggaaaacatcctcgccccaaactgtgtgtgcattctgaagaagcat
gtgaccaatattctgaaggatggacgccgagtggtcatcattttggaaaccgaattgatc
aaacctgctgaagaagtcagtggtaaaattggagaccctactccttactttgatggtcag
aataaaggccagcagtctggccccgtccctgcagctccaggccccgaagtcagacctcca
ctgcaggcacaaaacaagaacgacgtgaacataggtttcagcagagattttgccaaaaag
gctccatctgtaatgcccgatactccaggggggagctccaaagttgtacccatcgccagc
ctcaacccctaccagtccaagtggaccatccgcgcccgtgtcaccaacaagagcagcatt
cgcacatggagcaactctcgtggcgaaggcaaactcttctccatggagattgtagatgag
agcggagaaatccgagtgacagcttttacccaagaagtggacaaattcttccctttgatc
gaggttggcaaggtctactacatctccaagggctccctgaagattgccaacaagcagtac
acatcggtgaagaatgactacgagatgacgctcaatggggaaacgagcatcgtcccctgt
gaggacagctgtgacgttcccacggtgcagtgtgactttgtctccattgctgagctggag
aacagggacaaagatgccattgttgacgtgattggagtgtgcaagagcgtggacgagatg
acccgcctcaccaccaagaataaccgcgaagtgtccaagaggacgctgagtctgatggac
atgtctgggaagctggtgactgtcactctgtggggagaggaggcagagaagtttgacggc
tctgggcagcctatcgttgccattaaggccgcaaagctctcagactttggaggccgctcg
ctttctgcgtccttcagcagcaccctgatggtcaacccggacatccccgaggcgtataaa
ctccgaggctggtttgacaaagaaggccacgccatggatggacagtctctgacggagacg
aagggcagcggaggaggaagcaccaactggaagactttgtccgacgtgaagaacgagcat
ctgggacacggagaaaaggccgactactacacctgcatagccaccgtggtgtttctgcgg
aaggagaactgcctttatcaggcctgcccgacccaagactgcaacaaaaaagtggtcgac
cagcacaacggcatgttccgctgtgagaagtgcgataaagacttccccaacttcaagtac
cgcctcatcctgtctgctaacattgcagattacaccgacaaccagtgggtgacttgcttc
caggagagcgcagaggccattctgggccagaatgcagcttacctgggccagctcagggac
tcgagtgaagctgcgttggacgaagtcttccagcaatcaaatttcaacacgtttgtcttt
cgtaaccgagtgaaactggaaacgtacaacgatgagtccagagtaaaagccacagtgttc
gatgtgaagcccgtcgatcacagagattacagcaagaggctgatcataaacatacgaagc
atggctgtcaagtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (6)   
   Pfam (6)   
All databases (50)   

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