KEGG   Nothobranchius furzeri (turquoise killifish): 107382790
Entry
107382790         CDS       T05163                                 
Symbol
trpc1
Name
(RefSeq) short transient receptor potential channel 1 isoform X1
  KO
K04964  transient receptor potential cation channel subfamily C member 1
Organism
nfu  Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:nfu00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:nfu04040]
    107382790 (trpc1)
Ion channels [BR:nfu04040]
 Voltage-gated cation channels
  Transient receptor potential channel (TRP)
   107382790 (trpc1)
SSDB
Motif
Pfam: TRP_2 Ion_trans Ank_2 Ank_4 MTR4-like_stalk
Other DBs
NCBI-GeneID: 107382790
NCBI-ProteinID: XP_015810580
UniProt: A0A1A8AK79
Position
sgr08:complement(40516492..40527898)
AA seq 796 aa
MHISAWPYSLSVVMAALYQGTDASSPDKFLALKDVREVKEETTLDEKLFLLACEKGDYYM
VKKLLEENRHGELNVNCVDVLGRDAVTIAIENENLDILQLLLEYGCQTTDALLVAIDSEV
VGAVDILLNHRPRRSSKPSIAKLMQRIQNPEYSTTMDVAPVILAAHRNNYEILTMLLKQD
ISLPRPHAVGCECMLCNAKNKKDSLRHSRFRLDIYRCLSSPSLIMLTEEDPILRAFELSA
DLKELSLVEVEFRNDYDELAKQCKMFAKDLLAQARNSRELEVILNHTSSEDHVDKRGLLE
ERMNLSRLKLAIKYNQKEFVAQSNCQQFLNTVWFGEMASYRRKHTCLKMGTVSSVALLWP
LLSVCYLLVPRSRVGQIIHTPFVKFIIHSASYMTFLLLLNLYCLVYNEQKKNLMGPALEM
IDYLLILWILGMVWSDVKRLWYEGLEDFLEESRNQLSFVMNSLYLATFALKIVAHSKFCE
KVLERKNWDAFHPILVAEGLFAFANVLSYLRLFFMYTTSSILGPLQISMGQMLQEFGKFL
GLFLLVLFSFTIGLTQLYGKDLKDPNTNTTNKDCEGIFCQQQSNDAFHTFMGTCYALFWY
IFSLAHVALFVTRISYTEELRSFVGALIIGTYNIVVVIVLTKLLVAMLHKSFRQIANHED
KEWKFARAKLWLSYFDDKCTLPPPFNILPSPKTICYLVTSLRKWICSHTSKGKVKRQNSL
KEWRNLKQKRDENYQKIMCCLVHRYLTSTRQKMQSMDQATVENLNDLRQDLSKFRNEMRD
LLGFRTSKYAMFYPRS
NT seq 2391 nt   +upstreamnt  +downstreamnt
atgcacatcagtgcttggccgtactcgctctccgtcgtcatggcagctctgtaccagggt
acggacgcctcctctccggacaaattcctggccctgaaagacgtgagggaagttaaggag
gaaacgacgctggatgagaagctcttcctcctggcatgcgagaagggtgactactacatg
gtgaagaagctgcttgaggagaaccgacacggcgagctcaacgtcaactgcgtggatgtt
ctgggaagagatgcggtgaccatcgccatcgagaacgagaatctagacatcctgcagctt
cttcttgagtatggttgccagacaacagatgccttgttggtagccatagactcagaggtg
gtgggagctgtggacatccttctcaaccacagaccgaggcgatcctcaaagccgtctatc
gcaaaactaatgcagcggattcagaacccagagtattccaccaccatggacgtggctcca
gtcatcctggcagcacacaggaacaactacgagatcctgacgatgctgctgaagcaggac
atctcgcttccccggccacatgcagttggctgtgaatgcatgctatgcaatgctaaaaac
aagaaggacagcttaagacactccaggttccgcctggacatctaccgctgcttgtcgagt
ccttccctcatcatgctgaccgaggaggatcctattctcagagcgtttgagctcagtgca
gacctaaaggagctcagcctggtggaggtggagttcaggaacgactatgacgagctggcc
aagcagtgcaagatgtttgccaaggatctgctggctcaggctcggaactcccgggagctg
gaggtgatccttaatcacacctctagcgaggatcatgttgataagagaggcctgctggag
gagcgcatgaaccttagccggcttaaactggccatcaagtacaaccagaaagagtttgtg
gcccagtccaactgtcagcagttcctcaacaccgtctggtttggagaaatggccagctac
cggcgcaaacacacctgcctgaagatgggcacggtttccagcgtggcgctgctctggccg
ctgctctccgtctgctaccttctggtgccgcgctctcgagtcggccagatcatccacaca
ccgttcgtcaagttcatcatccacagcgcctcctacatgaccttcctgctgctgctcaac
ctttactgtttggtgtacaacgagcaaaagaaaaacctgatgggcccggcgctggagatg
atcgactacctcctgatcctctggatcctaggaatggtgtggtccgacgtgaagcgtctg
tggtacgaagggctggaggacttcctggaagagtcgaggaaccagctgagctttgtgatg
aactcgctttacctggccaccttcgctctcaagatagtcgctcacagcaagttctgtgag
aaggtactagagaggaagaactgggacgccttccatcccatcctggtggctgaaggactc
tttgcttttgctaatgttctgagttacctgcgactgttcttcatgtacaccaccagctcc
attctggggccgctacagatctccatgggtcagatgctgcaggagtttgggaaattcctg
ggcctcttcctgctggtgctgttctccttcactatcgggctcacccagctctacgggaaa
gacctcaaagacccgaacacaaacacaacaaacaaggactgcgagggcatcttctgtcag
cagcagagcaacgatgcgttccacacgtttatggggacctgctacgctctattctggtac
atcttctccttggctcacgttgcgctcttcgtcacccggatcagctacacagaggagctg
cgctcctttgtcggagccttgatcatcggcacatacaacattgtggtggttattgtgctg
accaagctgctggtggccatgctgcataaaagcttcagacaaatcgctaaccacgaggat
aaagagtggaagtttgcccgagccaaactgtggctcagctacttcgacgacaaatgtact
ctgcctccaccttttaacatcctcccttcgcccaaaaccatctgttacctggtgaccagt
ttgaggaagtggatctgttcacacacatctaaaggcaaagtgaagaggcaaaacagcctc
aaggagtggaggaacctgaagcagaagcgtgacgagaactaccagaagatcatgtgctgc
ctggttcaccgttacctgacctccacgaggcagaagatgcagagcatggaccaggccacc
gtggagaatctcaacgacctgcgccaagacctgtccaagtttcgcaacgagatgagggac
ctactgggcttccgtacatccaaatacgccatgttctacccgaggagctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (5)   
   Pfam (5)   
All databases (30)   

Download RDF
DBGET integrated database retrieval system