KEGG T02305: Ngar

Candidatus Nitrososphaera gargensis: Ngar_c22260

Entry

Ngar_c22260 CDS T02305

Gene name

lig

Definition

DNA ligase (EC:6.5.1.1)

Orthology

K10747

DNA ligase 1 [EC:6.5.1.1]

Organism

nga Candidatus Nitrososphaera gargensis

Pathway

nga03030	DNA replication
nga03410	Base excision repair
nga03420	Nucleotide excision repair
nga03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; DNA replication [PATH:nga03030]
Genetic Information Processing; Replication and repair; Base excision repair [PATH:nga03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:nga03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:nga03430]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C EH_Signature

Other DBs

NCBI-GI:

408404830

NCBI-GeneID:

13796089

UniProt:

K0ICR2

Position

complement(1730833..1732626)

AA seq 597 aa
MDFAPIVETFEQMEQTSSRLALTEYLVALLRKTPPDIIDKVTYLIQGKLYPDYEGIELGV
AERMVIRAIASSSGKDQLQIEKLYQKTGDLGDAAGEAMKSKSQSTLFSEPMTVERVYSTF
DRVARTTGPGSQETKLRLISSLLNDATAAEGRYIIKFVMGQLRLGIADYTVLDALAVAFT
GDKANRQVLENAYNVSSDLGTVARLLATKGLDAVKSIKITLFKPIRPMLAERIRTAEEAL
ERMEGKAAVEYKLDGERVQLHKGKQNVELFSRRLEKITSHYPDVAEAIKSIKSEVILEGE
VVAINAETGDYLPFQELMHRRRKYGVEEAMENYPVVMNFFDVLYVDGKSKTELTYMERRK
LLKKIIDAVKDDNKVRLIEQTIATKPEEIDRFMAAAIEDGCEGVMIKQLSSTYRAGAREY
AWVKLKREYRSDLADTLDLVVVGALHGRGRRTGKYGALLLAAYDQKTDMFQSVTKVGTGF
TDVHLEQFYNELEKHIINQRHARVQTGMDMDVWFEPNMVIEVIASEITLSPSHAAALNAL
RPGYGLALRFPKFTGKIRDDKKPEDATATEEIVEMYRRQLKVAGPSYAAEAEGEEGG

NT seq 1794 nt +upstreamnt +downstreamnt
ttggactttgcgcccatagtggagacatttgagcagatggagcagacctctagcaggctt
gcgctcaccgaatacctcgtcgccctgttgaggaagacgcctcctgacatcatcgacaag
gtgacctacctcatacagggcaagctgtaccccgactatgaaggcattgagctgggggtg
gcagaaagaatggtcataagggcgatagcgagctcatcgggcaaagaccaactgcagata
gaaaagttataccaaaagacgggcgacctaggggatgcggccggcgaggcaatgaagtca
aaaagccagtccactctcttttcagagcccatgacagttgagcgggtgtattctacattt
gacagggtcgcgcgcaccactggcccgggctcgcaggaaaccaagctgcgccttataagc
agcctgctcaacgacgctactgctgcagaaggccgctacatcataaaattcgtcatgggt
cagctgcggctcgggatagcggactataccgtgcttgacgcgctggcagtcgcgttcact
ggcgacaaggcaaacaggcaggtgcttgaaaacgcatacaacgtttcaagcgaccttggc
acagtcgccaggctgcttgccacaaagggacttgatgccgtcaaatcgatcaagataacc
ctgttcaagccaattcggccgatgcttgccgagcgcatcaggaccgcggaagaagcactt
gagcgcatggagggcaaggctgcagtcgagtacaagctggacggtgagcgcgtgcaacta
cacaagggcaagcagaacgtggaactattttcaaggaggctggaaaagataaccagccac
tacccagacgttgctgaagccatcaagtcgataaaatccgaagtgatactggaaggcgag
gtggttgcgataaacgcggagactggggattatctaccctttcaggaactgatgcaccgc
cggcgcaaatacggtgtagaggaggcgatggagaactatcccgtcgtcatgaactttttt
gacgtgttgtatgtcgacggaaagagcaagacggaactgacctacatggaaagaaggaag
cttctcaaaaagataatcgatgcagtcaaggatgataacaaggtcaggctgatagagcag
acgattgcgaccaagccggaagagatcgaccggttcatggcggctgcgatagaggatggc
tgcgagggagtcatgataaagcagttgtcaagcacgtaccgggcaggcgcaagggagtac
gcgtgggtcaagctaaagcgtgaataccgcagcgaccttgcagacacacttgatctggtg
gtcgtcggcgcgctacacggaaggggcaggcgcacaggcaagtacggcgcgctcctcttg
gctgcatacgaccaaaagacagacatgttccagagcgtcaccaaagtgggcaccggcttt
acggacgtgcaccttgagcagttctacaatgagctcgaaaaacacatcatcaaccagcgt
cacgcccgcgtccagacaggaatggacatggatgtgtggtttgagcccaacatggtgatc
gaggtaattgcttccgagatcacgctcagcccgtcgcacgccgcggcattgaatgcactg
aggcctggctatggtcttgcgctccgctttccaaagttcactgggaaaatccgcgacgac
aaaaagccggaggacgccactgccaccgaggagattgtagagatgtacaggaggcagctg
aaggtggccgggccgtcatatgcagcagaggcagaaggggaagaaggcggctag

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

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