KEGG   Nannospalax galili (Upper Galilee mountains blind mole rat): 103741254
Entry
103741254         CDS       T03372                                 
Symbol
Patl1
Name
(RefSeq) PAT1 homolog 1, processing body mRNA decay factor
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
ngi  Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ngi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103741254 (Patl1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ngi03019]
    103741254 (Patl1)
Messenger RNA biogenesis [BR:ngi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103741254 (Patl1)
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     103741254 (Patl1)
SSDB
Motif
Pfam: PAT1
Other DBs
NCBI-GeneID: 103741254
NCBI-ProteinID: XP_008840230
UniProt: A0A8C6QHM5
Position
Un
AA seq 774 aa
MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKL
PVTVNEQTGNGERDERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPQ
PGSLNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPPQGPEDDRDLSERALPRRS
TSPIIGSPPVRAVPIGTPPKQMAVPSFNQQQILCPKPVHVRPPMPPRYPAPYGDRMSPNQ
LCSVPNSSLLGHPFPPGVPPVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAM
NPKLLQGRVGQMLPPAPGFRAFFSAPPPATPPPQQHPPGSGPHLQNLRSQAPLFRPDTTH
LHPQHRRLLHQRQQQNRNQHRNLNGAGDRGSHRTSHQDHLRKDPYANLMLQREKDWVSKI
QMMQLQSTDPYLDDFYYQNYFEKLEKLSAAEDMPGDGPKKERTKLITPQVARLEHAYKPV
QFEGSLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDV
EDYERRYLLSLEEERPALMDERKHKICSMYDNLRGKLPGQERPSDDHFIQIMCIRKGKRM
VARILPFLSTEQAADILMTTARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVTVTSLL
RQLMNLPQSAAAPAPSSPPLTAVLQNKFGLSLLLILLSRGEDLQSSDPTTESTQNNQWTE
VMFMATRELLRIPQAALAKPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
NT seq 2325 nt   +upstreamnt  +downstreamnt
atgttccgctacgagtctttggaggattgtcctctagatgaagatgaagatgcatttcag
ggtctgggagaagaagatgaggagattgatcaattcaatgatgatacatttgggtcaggt
gcagttgatgatgattggcaggaagcacatgagcgcctggctgagttggaagagaagcta
ccagtgacagttaatgaacaaacaggcaatggagagagggatgagagggacgagatggac
ctgttgggtgaccatgaggagaatctagcagagaggctcagtaagatggtgattgaaaat
gaactggaagatccagctatcatgagggctgtgcagaccaggccagttttacaacctcaa
ccaggaagtctgaattccagcatctgggatgggtctgaagttctgaggcgaatccgtgga
ccactacttgctcaggaaatgcctacagtatctgtattagaatatgccttgcctcagagg
cccccacagggcccagaagatgatcgtgacctttctgagcgagcattaccaaggaggtcg
acttcacctatcatcggaagtcctcctgttagagctgttcccataggcaccccacccaag
cagatggctgttcccagcttcaaccaacaacagattctgtgtccaaagcctgtccatgtt
cggccgccaatgccaccacgttatcctgctccctatggtgacaggatgtcgccaaaccag
ctctgcagtgtcccgaactcttccctcctgggtcacccttttcctcctggtgttccccct
gtacttagccccctccagagagcacagcttcttggaggagcacagctacagcctggacgg
atgtctcccagccagtttgcacgggtccctgggtttgttggtagcccactggctgccatg
aatcccaagttgctgcaagggcgagtcgggcagatgcttcccccagctccaggctttcgt
gccttctttagtgctccaccccccgctacaccacctccacagcagcaccctcctggttca
ggacctcacctgcaaaacctaagatctcaggccccactgtttagaccagacacaactcac
cttcacccacagcaccggcgactattacatcagaggcagcagcagaatagaaatcagcat
aggaatctcaatggtgctggagatagaggaagtcaccggaccagtcaccaagatcatctt
cgaaaggatccatatgctaatctcatgctgcagcgggaaaaggattgggtctctaaaatc
cagatgatgcaactgcagagcactgatccctacctggatgatttttattaccagaattac
tttgaaaaactggagaaactgtcagctgctgaagacatgccaggcgatggccctaagaag
gagcgcaccaagctcatcacccctcaggtggccaggctggagcatgcctataagcctgtg
cagttcgaaggctctttggggaagcttactgtctctagtgtgaataatcctcggaaaatg
atcgatgctgttgtgacatctcggagtgaggatgatgaaacaaaagaaaaacaagttcgg
gacaagagaagaaaaactcttgtcataattgagaaaacctatagtttacttcttgatgtg
gaggattatgaaaggcgctatcttctgagcctggaagaagagcggcccgccctgatggat
gaaagaaagcacaaaatctgtagcatgtatgacaacctgaggggcaaactccctgggcag
gaaaggccaagcgatgaccactttatacagatcatgtgtatcagaaaagggaagagaatg
gttgcccgcattctccctttcctctccacagagcaagcagctgatattctcatgacaact
gccaggaacctccctttccttatcaagaaggatgcacaagatgaggtgctgccatgcttg
ctgagtcccttctctctcctcctctatcatcttccatcagtgactgtcaccagccttctg
cggcagctaatgaacctacctcagagtgcagctgcaccagcgccctccagccctcccctc
actgctgtgctgcagaacaagtttggcttgtcactgctccttatcctcctgagccgtgga
gaagacctgcagagttcagaccctacgacagaatcaacgcaaaataaccagtggacagag
gtgatgttcatggcaaccagagaacttctccggatccctcaagcagccctggccaagcca
atctctatacccacaaatctagtgtcccttttttctcgctatgttgaccggcaaaaactg
aacttgctggagacaaaactacagctggttcaggggatacgataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (1)   
   Pfam (1)   
All databases (31)   

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