KEGG T00348: Nham

Nitrobacter hamburgensis: Nham_0448

Entry

Nham_0448 CDS T00348

Gene name

ligD

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

nha Nitrobacter hamburgensis

Pathway

nha03410	Base excision repair
nha03420	Nucleotide excision repair
nha03430	Mismatch repair
nha03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:nha03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:nha03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:nha03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:nha03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S Hjc

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(493562..496162)

AA seq 866 aa
MHDATRLHYDFRLEYDGVFKSWAVTRGPSLDPAEKRLAVEVEDHPLDYGDFEGTIPKGQY
GGGTVEIWDRGYWYADDPAKGLAKGDLKFALMGEKLKGEWVLVRMKHDRSGGKRTNWLLI
KHRDDYAKPGTGEEVLKHDRSVASGRTLRQIAEGKGKAPEPFMMTRRIAGSDAVWDSNKG
VAAKARDRNSKHSAVKTSAKPASARKRLPTKAKANAIKSEMPDFAGLQLCKTSTRPPSAD
GWVHEIKFDGYRIQMRIENGDVTLKTRKGLDWTDKFPAIASAATKLPDAIIDGEIVALNQ
HGDPDFSAMQAALSEDKTDELVFFAFDLLFAEGEDLRPLSLLARKERLRQLLGRSAKSAR
ASIRYVEHFDADGAQVLDTAREAGLEGIISKRADEPYRAGRGGSWLKSKSRAGHEVVIGG
WKTTSGKFRSLMAGVYNGDYLVYTGIVGTGYGRDTVKRIMPALKAAAASKSPFSGNNAPP
GGPEVHWLKPELVAEIEFAGWTADGMVRQAAFKGLRADKPAREVKAEAPSHATVPRLNAT
RLAASAAAAARADTTTSRQPRAPAARDRSTVMGVAISHPDKALWPDAGDKQPVTKRDLAA
YMETAGDWIIQHIRGRPCSIVRAPDGIGGETFFQRHAMPGLSDLVTEVKVSGDRKPYLQI
DRVEGLIAVAQIGGLELHPWNCAPDQYDVPGRLVFDLDPAPDVAFPDVIAAAKEMKQRLE
TLGLETFCKTTGGKGLHVVTPLAITQKNRLNWKQAKMFAQAVCEQMATDTPDKYLITMSK
KQREGKIFLDYLRNDTKSTAVAPLSPRARPGATVSMPLNWSQVKAGLDPKRFTLRTAPDL
LKKSKAWSGYDEAARPLAAAIGKLVR

NT seq 2601 nt +upstreamnt +downstreamnt
atgcacgacgccacccggctgcattacgacttccgtctcgaatatgacggggtgttcaag
tcctgggcggtgacgcgcggcccctcgctcgatccagccgagaagcggctggcggtggag
gtcgaggatcacccgctcgactacggcgacttcgagggtaccatcccgaaaggccagtat
ggcggcggcaccgtggagatctgggaccgcggctattggtatgccgacgatccggcgaag
ggtctcgccaagggcgacctcaaattcgcgctgatgggcgagaagctcaaaggcgaatgg
gtactggtgcgcatgaagcacgatcgcagcggcggcaagcgcaccaactggctgctgatc
aagcaccgcgacgactatgccaaacccggcacgggcgaggaggtactgaagcacgaccgc
tcggttgcgtcggggcgaacgctcagacagatcgcggagggcaagggcaaggcaccggag
ccattcatgatgaccagacggatcgccggttcggatgcggtgtgggattcaaacaagggc
gttgctgccaaggcgcgcgacaggaactcgaaacattcagcggtaaagacgagtgccaaa
cctgcttcagcccgcaagcgattaccaacgaaggcgaaggccaacgcgatcaagagcgag
atgccggacttcgccgggcttcaactctgcaagacgtcgacgcgcccgccgtcggcggac
ggctgggtgcatgagatcaaattcgacggctaccgcatccagatgcggatcgagaacggt
gacgtgacgctcaaaactcgcaagggcctcgactggaccgacaagtttccggccatcgca
agcgcggctacgaaattgcccgacgccatcatcgacggcgagatcgttgcattgaaccaa
catggcgatccggacttctcggccatgcaggccgcgctgtccgaagacaagaccgacgaa
ctggtgttctttgccttcgacctgctgttcgccgagggtgaggatttgcgcccgctgtcg
ctgctcgcgcgcaaggaacggcttcgtcaattgctgggacgttctgcaaaatcagcccgt
gcgtcgatccgctacgtcgaacatttcgatgccgatggcgcgcaggtcctggacaccgcg
cgtgaggcgggacttgagggcatcatctcaaaacgggccgacgagccctatcgcgccggc
cgcggcggaagctggctcaagagcaaaagccgcgccggccatgaggtggtgatcggcggc
tggaagacgacaagcggaaaattccgctcgctgatggccggcgtctacaacggcgactac
cttgtctatactggaatcgtcggcaccggctacggccgcgacactgtcaagcgcatcatg
ccggcgctgaaggcggctgccgcctcgaagagtccattctccggcaacaacgcaccgccg
ggcggtcccgaggtgcattggctgaagcctgaactcgttgccgagatcgaattcgccggc
tggaccgccgacggcatggttcggcaggcggccttcaagggattgcgcgcagacaagccg
gcccgcgaggtcaaggcggaggcgccgtcccatgcgacggtcccaaggctcaacgcgaca
aggctcgccgcgagcgctgcggccgcagcgcgcgctgatacgacgacatcgcgccagccg
cgcgcacctgcggcgcgggatcgctcgacggtcatgggcgttgcgatctcgcacccggac
aaggcgctgtggccggatgccggcgacaagcagccggtcaccaagcgcgaccttgccgcg
tacatggaaacggccggcgactggatcatccagcacatccgcgggcggccgtgttcgatc
gtgcgcgctcccgacggcatcggcggcgagaccttcttccagcgtcacgccatgccgggc
ctgtccgatctcgtcaccgaagtgaaggtgtccggcgaccggaagccttatctgcagatc
gaccgcgtcgaaggcctgatcgcggtggcgcagatcggcgggctcgaactgcatccgtgg
aattgcgcgcccgatcaatatgacgtgccggggcggctggtgttcgacctcgatccggcg
ccggacgtcgcattcccggatgtgatcgcggctgccaaggagatgaagcaacgcctcgag
acgctcgggcttgaaaccttctgcaagaccaccggcggcaagggcctgcatgtggtcacg
ccgcttgcaatcacgcagaagaacaggttgaactggaagcaagccaaaatgttcgcgcag
gccgtctgcgaacaaatggcaaccgatacacccgataaatatctcatcaccatgtcgaag
aagcagcgcgagggcaaaatctttctcgattatcttcgcaacgacaccaaatcgaccgcg
gtcgcgcctctgtcgccgcgcgcgcgccctggcgccaccgtgtcgatgccgctgaactgg
tcgcaggtgaaagccggcctcgatccgaaacgcttcacgctccgcaccgcgccggacctc
ctgaaaaagagcaaggcctggtcgggctacgacgaggccgcgcgtccgctggccgctgcg
atcggaaagctggtccgatga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-NHA (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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