KEGG   Nitrobacter hamburgensis: Nham_2205
Entry
Nham_2205         CDS       T00348                                 
Name
(GenBank) beta-lactamase-like protein
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
nha  Nitrobacter hamburgensis
Pathway
nha03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nha00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Nham_2205
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nha03019]
    Nham_2205
Messenger RNA biogenesis [BR:nha03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Nham_2205
SSDB
Motif
Pfam: RMMBL RNase_J_C Lactamase_B_2 Lactamase_B Ribosomal_S24e
Other DBs
NCBI-ProteinID: ABE62997
UniProt: Q1QLA0
Position
complement(2452870..2454543)
AA seq 557 aa
MIARPDELMFAPLGGVGEIGMNLSIYGLGNRHQRSWLAVDLGVSFGDEEHLPGIDLIMPD
VRFLEKERKNLVGLVLTHAHEDHFGAIIELWPRLKCPIYATKFSAALFEAKCAAERNPPD
IPVTVVPSGDRIDLGPFGVEFVPVAHSIPESHALAIHTAAGIVVHTGDWKIDPTPIVGPP
TDERRLRELGDEGVLALIGDSTNAVRDGRSPSETEVAKTIAELVKAARGRVAVTTFASNV
GRLRAVADAARAAGREVVVVGRAMERVVQVARETGHLDGMQELRSADVYGHLPSDKVLAL
CTGSQGEPRAALARIAKDDHPQVTLNRGDTVIFSSRTIPGNERAVGAIINGLVTQGIKVI
TDRTELVHVSGHPRRDELRDMIAWVRPQLLIPVHGEALHLSEHAQLARAAGVPKVLICKN
GDLVRLGPGDPGIIDELPSGRLYKDGAILEDSKSRAVVERRRMAFAGCVFVAIAVTEKGE
LADDPEIDLVGIPEKNTVGEVIDDIVFDTIVSTVKALPRTRRRDPDAMAESLRRAVRAVV
AEEWGKKPLCYVHVLLI
NT seq 1674 nt   +upstreamnt  +downstreamnt
atgatagcgcggcccgatgaactgatgttcgctccgctcgggggtgtgggtgagatcggc
atgaacctgtcgatctacgggctcggcaaccgccatcagcgaagctggctggcggtcgat
ctcggtgtgtccttcggcgacgaggaacatttgccgggcatcgatctcatcatgccggac
gtccggtttctcgaaaaggaacggaagaacctggtcggtctcgtgctgacccacgcccat
gaggatcacttcggcgcgattatcgagttatggccgcgcctgaaatgcccgatctacgcc
accaaattcagcgccgcattgttcgaggccaaatgcgcggcggaacgcaatccgccggac
atcccggtgaccgtggtgccctcgggtgaccgcatcgatctcggtccttttggtgtcgaa
tttgttccggtggcgcattcgattccggaatcccatgcgctggcgattcatacggcggcg
ggaatcgttgtgcataccggcgactggaagatcgatccgacccccatcgtcgggccgccg
accgacgagcggcgattgcgcgaacttggcgacgagggcgtgctggcgttgatcggcgat
tccaccaatgcggtgcgagacgggcgctcgccgtccgaaaccgaagttgccaaaaccatt
gcggaattggtgaaggcagccaggggccgggtcgcggtgacgacgttcgcttccaatgtc
gggcggctgcgcgcggtggccgatgccgcgcgcgcggcgggacgcgaggtcgtggtcgtc
ggccgcgccatggagcgcgtggtgcaagtcgcgcgcgagaccggacatctggacgggatg
caggaattgcgcagcgccgacgtgtatggccatcttccgtcggacaaggtgttggcgctg
tgcacgggcagccagggcgagccgcgggcggcgctcgcgcgtatcgccaaggatgatcat
ccgcaagtcacgctgaaccgtggcgataccgtgatcttttcctcacgcaccattcccggc
aacgagagagctgtcggcgcgatcatcaatggtctggtgacccagggcatcaaggtcatt
accgatcgcaccgaactggttcacgtgtccggccatccgcgccgcgacgaactgcgggac
atgatcgcgtgggttcgcccgcagttgctgatcccggtgcacggcgaggcgttgcatctc
tccgaacatgcgcagttggcgcgcgccgcgggcgtgccgaaagtcctgatttgcaaaaac
ggcgatctggtccggcttgggcccggagaccctggcatcatcgatgaattgccgtcggga
cggctttacaaggatggcgccattctcgaggattcaaagtcgcgcgcggttgtcgagcgg
cggcgcatggcatttgccggctgcgtgttcgtggcgatcgccgtcacggagaagggtgaa
ctggctgatgatcccgagattgatctcgtcggtataccggagaagaatacggtcggcgag
gtgatcgacgacattgttttcgatacgattgtctcgacggtgaaggcgttgccgcgaaca
cggcggcgcgatccggatgcgatggccgagtcattgcgccgcgccgtgcgggcagtggtt
gcggaagagtggggcaagaagccgctctgctacgttcacgttctgttgatctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (13)   

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