KEGG   Nitrobacter hamburgensis: Nham_3439
Entry
Nham_3439         CDS       T00348                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
nha  Nitrobacter hamburgensis
Pathway
nha03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nha00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Nham_3439
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nha03019]
    Nham_3439
   03400 DNA repair and recombination proteins [BR:nha03400]
    Nham_3439
Enzymes [BR:nha01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Nham_3439
Messenger RNA biogenesis [BR:nha03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Nham_3439
DNA repair and recombination proteins [BR:nha03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Nham_3439
SSDB
Motif
Pfam: RQC HRDC DEAD Helicase_C RecQ_Zn_bind HHH ResIII
Other DBs
NCBI-ProteinID: ABE64169
UniProt: Q1QHX8
Position
complement(3784284..3786083)
AA seq 599 aa
MIATALEILKTVYGYDAFRGPQARIVAHVIGGDNAFVLMPTGGGKSLCYQIPAIARPGMG
LVVSPLLALMADQVAALRQAGVRAAALNSDLPADERRALWRDIHGGSLDLLYVAPETLLR
QAVLERLGQTRLSLIAIDEAHCLSQWGHDFRPSYRQLDALVGLFPDTPRMALTATADEPT
RAEILSHLDIAETDAFIAGFDRPNIRYTIEEKDNPRAQLKDFLKRHKGESGIVYCLSKRK
TEETAAWLRDQGYDALAYHAGMDRAAREANQMRFQHGEAVVMVATIAFGMGIDKPDVRFV
AHIDLPGSIEAYYQETGRAGRDGLPSDALMLYGYEDIALRSRFIEQSDTPDPRKRMERQK
LDALLGLAETAGCRRQVLLSYFGDDCEPCGNCDTCAEPPRLFDGTIAAQKALSCVYRTGE
RFGQAYIVDVLLGVENDRIAQFGHNRVSTFGIGTEHDNRTWRAILRQLIALRLVDVDLAG
HGGLSITPAGRDFLRDKPTLMLRVPAAPRARRQKVARSAAQSAVTEADRDLFQALRQKRM
DIARAQNVPPYVIFHDKTLIELAAARPASRAEMAKVPGVGDAKLDRYGPAFLAVIAEHA
NT seq 1800 nt   +upstreamnt  +downstreamnt
atgatcgccaccgccctcgaaatcctcaagaccgtctacggctatgatgcgttcaggggg
ccgcaggcgcgcatcgtcgcgcatgtcattggcggcgacaacgcctttgtgttgatgccg
acgggcggcggaaagtcgctctgctaccaaatccccgccatcgctagacccggcatggga
cttgtggtgtcgccgctactggcgctgatggccgatcaggtggcggccttgcggcaggcg
ggcgtgagggcggccgccctcaactcggatctgccggccgacgagcggcgcgcgctgtgg
cgcgacatccacggcggcagtctcgatctgctctacgtcgcgcccgagacgctactgcgc
caggcggtgctggagcggctcggccagacgcggctgtcgctgatcgccatcgacgaggcc
cattgcctgtcgcagtggggacacgacttccgcccttcctaccgccagctcgacgccctt
gtcgggctgtttcccgacacgccgcgcatggcgctgacggcgacggccgacgagccgacg
cgcgccgaaatcctgtcgcatctcgacatcgccgaaactgacgccttcatcgccggtttc
gaccggcccaacatccgttacacgatcgaggaaaaggacaatccgcgcgcgcaactgaag
gacttcctcaagcgccacaagggcgagagcggcatcgtctactgcctgtccaagcggaaa
acggaggaaaccgccgcctggttgcgcgaccaaggctatgacgcgctcgcctatcacgcg
gggatggacagggccgcgcgggaggccaaccagatgcgtttccagcacggcgaggcggtc
gtcatggtcgcgaccatcgccttcggcatgggcatcgacaagccggacgtgcgcttcgtc
gcccatatcgacctgccgggcagcatcgaggcctattatcaggagacgggccgcgccggg
cgcgacggcctgccgtccgatgcgctgatgctttacggttacgaggacatcgcgctgcgc
agccgcttcatcgagcaatcggatacgcccgacccgcgcaagcgcatggagcgccagaag
ctcgacgcgttgctggggttggccgagacggcgggctgccgccggcaggtgctgttatcc
tatttcggtgacgattgcgagccatgcggcaattgcgacacctgcgccgagccgccaagg
ttgttcgatggcacgatagccgcgcagaaggcgctgtcgtgcgtctaccgcaccggcgag
cgcttcgggcaggcctatatcgttgacgtgctgctcggcgtcgagaacgaccgcatcgcc
cagttcggccacaatcgtgtttccaccttcggcatcggcaccgagcacgacaaccgcact
tggcgggcgatcctgcgccagttgatcgcgctgcgccttgtcgacgtcgatctggccggc
catggcggcctgtcgatcacgccggccggccgcgactttctgcgcgacaagccgacgctg
atgctgcgggtgccggcggctccgcgcgcgcggcgccaaaaggtcgcgcgcagcgcggcg
cagtctgccgtcactgaggcggaccgtgacctgttccaggcgttacggcaaaagcgcatg
gacatagcgcgcgcgcaaaacgtgccgccctatgtgattttccacgacaagacgctgatc
gaactggcggcggcgcggcccgcgtcgcgcgccgagatggcgaaggtgcccggtgtcggt
gacgccaagctcgaccgctatggcccggccttcctggcggtgatcgccgagcacgcatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (25)   

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