KEGG T04418: A8C56

Niabella ginsenosidivorans: A8C56_00470

Entry

A8C56_00470       CDS       T04418

Name

(GenBank) recombinase RecQ

K03654

ATP-dependent DNA helicase RecQ [EC:5.6.2.4]

Organism

nia Niabella ginsenosidivorans

Pathway

nia03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:nia00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A8C56_00470
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nia03019]
    A8C56_00470
   03400 DNA repair and recombination proteins [BR:nia03400]
    A8C56_00470
Enzymes [BR:nia01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     A8C56_00470
Messenger RNA biogenesis [BR:nia03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     A8C56_00470
DNA repair and recombination proteins [BR:nia03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      A8C56_00470

SSDB

Motif

Pfam:

DEAD Helicase_C RecQ_Zn_bind ResIII MarR Fe_dep_repress HemN_C

Other DBs

NCBI-ProteinID:

ANH83607

UniProt:

A0A1A9I7F5

Position

104618..106534

AA seq 638 aa
MEELLHRTLKNYFGYDSFRPLQLAIIKTAIEGKDVLALMPTGGGKSLCYQIPGLSKEGLC
LVISPLIALMNDQVQNLRKKNITAFAIHTGMSRREVINVLETAAHSNCKFLYVSPERLGT
ALFKEYLPALGVRLIAVDEAHCISQWGYDFRPSYLRIALLREELPGVPVIALTASATPKV
QEDICLKLSPEGENRFKIFRQSFERPNLSYSVIKTGSRIQKITEILKKITGTAIIYCKTR
KHTKEIKDLLLMEGFSADYYNAGLTAEERSRKQQDWIQNRTRVIVCTNAFGMGIDKPDVR
IVIHAAIPDCLESYYQEAGRAGRDGEKAYAVLLYNEPELQALEQLTEQRFPSLETIRAVY
GSVVNYLQLPEGEAPGEFYDFDLKDFIKKFGLDITTAIYSLKALEQDGWLSFNEQVFIPA
TVRFTTYKETLYEYEATHADLEPLIKTLLRTYEGIYDYPVGISESYIAYLMKTDAAAVKE
QLLRLHADGIIDYQPKKEDPQLMLTRTRVRIADLQINTKNYDARKRLFAERIAQMKKYVT
SETECRSKMIGNYFGDTEIKDCGICDNCLKRRNSQLSRKTFDSIQAKIRETLTDPCTIPQ
LMAQLQDTDKEQVWTVINFLTREEKIRMLEDGRVCWNN

NT seq 1917 nt +upstreamnt +downstreamnt
atggaagagttattacaccgcacgcttaaaaattattttggctatgactctttccgtcct
ttgcagttggctattattaagaccgctattgaagggaaagatgttttggcactaatgcct
acaggaggcgggaaatctttatgctatcagattccgggactgagtaaagaaggtttatgc
ctggtgatctctcccttaattgcattgatgaacgatcaggtgcaaaacctgcgcaaaaag
aatattacggcctttgccattcataccggtatgtcgcgcagggaagtgatcaatgttttg
gaaactgctgcccacagcaattgtaagtttttgtatgtttcgcctgagcggctgggaacc
gctttatttaaagaatatctgccggccctgggcgttcgtcttatagcggtagatgaagcg
cattgcatttctcaatggggatatgatttccgcccttcttacctgcgtattgcgctcctg
cgggaggaactgccgggtgtgccggtcattgccttaaccgcttccgccacaccaaaggtg
caggaagatatttgtttaaaattatctccggagggcgaaaacaggtttaaaatcttccgg
cagtcttttgagcgacctaatctttcatacagtgttataaaaacaggcagccgtattcag
aaaatcacagaaattttaaaaaaaataaccggcactgcgatcatttattgtaaaacgaga
aagcatacaaaggaaataaaagacctgctgctgatggaaggcttttcggcggactattat
aatgccggcttaactgctgaagaacgcagccggaaacagcaggactggatacagaaccgg
acccgcgtaattgtttgcaccaatgcgtttggaatggggattgataagccggatgtgcgg
atcgtgatccacgcggctattccggattgcctggaaagctactaccaggaagcagggcgt
gcagggcgggatggtgaaaaagcatatgccgttttgttatataatgagccggaactgcag
gcgctggaacagcttaccgaacagcgttttccctctttggaaaccatacgagccgtttat
ggcagcgtggtcaattacctgcaattaccggaaggggaagcaccgggtgagttttacgat
tttgacctgaaagattttattaaaaaattcgggctggacattactactgccatttatagt
ttaaaagcactggaacaggatggatggctgagctttaatgagcaggtatttataccggca
accgtgcgttttaccacatataaagaaacgttgtacgaatacgaagctacccatgcagac
cttgagccccttataaaaaccctgttgcgcacttatgagggtatttatgattaccctgtc
gggatatcagaatcatatatagcctacctgatgaaaacggacgctgctgctgtaaaagaa
caactgctccggctgcatgccgatggcattatcgattaccaacccaaaaaagaggacccg
caattgatgcttacgcgaacaagggtaagaattgccgacctgcagatcaataccaaaaat
tatgacgcccgcaagcggctttttgcagagcgcatagcgcagatgaaaaaatatgttacc
agtgaaacagaatgccgcagtaagatgattggtaattatttcggggatacggaaataaag
gactgcggtatttgtgacaattgtttaaaaaggaggaatagccagctaagccggaaaaca
ttcgacagtatccaggcaaagatcagggaaacgctcactgatccctgcaccattccgcaa
ttgatggcacagctacaggataccgacaaagaacaggtatggacggtgatcaattttctt
accagagaagaaaagatccggatgctggaagatggaagggtatgctggaataactga

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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