KEGG   Candidatus Nitrosopumilus sediminis: NSED_02600
Entry
NSED_02600        CDS       T02303                                 
Name
(GenBank) zinc finger TFIIB-type domain-containing protein
  KO
K03124  transcription initiation factor TFIIB
Organism
nir  Candidatus Nitrosopumilus sediminis
Pathway
nir03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:nir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    NSED_02600
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nir03021]
    NSED_02600
Transcription machinery [BR:nir03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIB
     NSED_02600
 Prokaryotic type
  Archaeal type
    TFB
     NSED_02600
SSDB
Motif
Pfam: TFIIB TF_Zn_Ribbon Trm112p Auto_anti-p27 OrfB_Zn_ribbon Cys_knot LysW-like_globular
Other DBs
NCBI-ProteinID: AFS82328
UniProt: K0B873
Position
complement(436961..437914)
AA seq 317 aa
MNILEKQNCPECKSTLVDDMQNGEIICSGCGVVVDDQIADFGPETISSNFEDKMKLARAT
GQTTYSQHDLGITTEISISAKDFSGKTINREVAGQMNNLRKWQQRVRVSSPRERRLANVL
AKMGETCEGLNLSKNVLETASMIYRNLDGHVDVKGKSVVSITAATIYMACKQCDVVRSLE
EICRGICPAKDVKSKTKLAARYYRTMVMEMGQLHAPVVTMDKYISKIANMTQTEVRVERL
ALEIAEKTKDSSIADGKAPNGIAAAYLYVASVLLGQNVLQRDVSSIAGVTEVTIRNRCKE
ILTCYKLKITLRPSLAN
NT seq 954 nt   +upstreamnt  +downstreamnt
atgaacatactagaaaaacaaaactgtcctgaatgtaaatctacattagtagatgacatg
cagaatggtgaaattatctgttctggttgcggcgttgtcgtcgatgatcagattgcagat
tttggtccagaaacaataagctcaaacttcgaagacaagatgaagcttgcaagagcaaca
ggacaaacaacctattctcaacatgatttgggaataactactgagatttcaattagtgca
aaagactttagcggaaaaacaataaaccgtgaagttgcaggccaaatgaataatctcaga
aagtggcaacaaagagtaagagtttcctcaccaagagaaagaagattagcaaatgtttta
gcaaaaatgggtgaaacatgtgaaggtctaaatctttcaaagaatgttttggaaacagca
tctatgatatacagaaacttggatggacatgttgatgtgaaaggaaaatcagtagttagc
ataacagctgctacaatttacatggcatgcaaacaatgtgatgtagtaagatcattagaa
gaaatttgccgaggaatttgtccagcaaaagacgttaaatcaaaaacaaaacttgcagct
agatactatagaaccatggtaatggaaatgggacaactacatgccccagttgtaaccatg
gacaaatacatctcaaagatagcaaacatgacacagactgaggttagagttgaaagacta
gccttagaaattgcagaaaaaaccaaagacagcagtattgctgatggtaaggctccaaac
gggattgccgcagcatatctgtatgtagcatcggttttacttggacaaaacgttctacaa
agagacgtttcaagtattgcaggagtcacagaagtaactatcagaaatagatgtaaagaa
attctaacgtgctataaactcaaaattactttgagaccatctctggccaactaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (15)   

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