KEGG   Nitrosomonas sp. AL212: NAL212_2412
Entry
NAL212_2412       CDS       T01443                                 
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
nit  Nitrosomonas sp. AL212
Pathway
nit03030  DNA replication
nit03410  Base excision repair
nit03420  Nucleotide excision repair
nit03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:nit00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NAL212_2412
   03410 Base excision repair
    NAL212_2412
   03420 Nucleotide excision repair
    NAL212_2412
   03430 Mismatch repair
    NAL212_2412
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:nit03032]
    NAL212_2412
   03400 DNA repair and recombination proteins [BR:nit03400]
    NAL212_2412
Enzymes [BR:nit01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     NAL212_2412
DNA replication proteins [BR:nit03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     NAL212_2412
DNA repair and recombination proteins [BR:nit03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     NAL212_2412
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     NAL212_2412
   MMR (mismatch excision repair)
    DNA ligase
     NAL212_2412
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      NAL212_2412
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH BRCT_2 RUBY_RBDX Cys_rich_KTR
Other DBs
NCBI-ProteinID: ADZ27228
UniProt: F9ZGS5
Position
complement(2391873..2393906)
AA seq 677 aa
MNEGIEKIRHRIQDLRAEIELHNYRYYVLDTPTIPDAEYDRLLRELQHIEQDYPQLITAD
SPTQRVGAAPLKAFSQVVHRRPMLSLSNAFDDAEVEAFDRRVCEGLAVDNVEYAVEPKFD
GLAVSLCYENGIFKTGATRGDGYTGENITLNLRTIRSIPLSLPVLNPPSWLEVRGEVLML
RADFLALNQRQSAKGEKEFANPRNAAAGSLRQLDPGITATRRLTFFAYGVGEYQDCHMPL
DKHSHVMAYLASLHFPIAKEGGVVKGLQELLAYYQTIEVQRVRLPYDIDGVVYKVNSLAQ
QERLGFVSRAPRFALAHKFPAQEAITQLSGIEIQVGRTGALTPVARLKPVFVGGVTVTNA
TLHNADEIERKDVRIGDTVIVRRAGDVIPEIVSVILEKRPVDTQVFVMPEHCPVCGAKAV
RLVDEAVSRCTGGLFCPAQRKQAILHFASRRAMDIEGLGDKLVEQMVDRAIIRTPADLYK
LGLGALADLERMAEKSAGNILRAIEKSKHTTLARFIYALGIRNVGEATAKDLAAHCGSLD
RLIEAGSERLQQIPDVGPVVAQSIADFFAEAHNREVIEQLRACGVYWNEHEGISVLAGEA
RPLQGKTFVLTGTLPIMSREEAKEKIELLGGKVSGSVSKKTDYVVVGADPGSKYDKALSL
GIAVLDEAGLLELLQER
NT seq 2034 nt   +upstreamnt  +downstreamnt
atgaatgaaggaatcgagaaaataaggcaccgcatacaagatttacgcgccgagatcgag
ttgcacaattaccggtattacgtattggacactccaaccattcccgatgccgaatatgac
agactattgcgcgagttgcagcacattgaacaagactatccgcaactaataacagccgat
tcccccacacaacgtgtgggtgcggccccactcaaagctttttcgcaagttgtgcatcgt
aggccgatgctatcgctgagtaatgcgtttgacgatgccgaagtggaagctttcgatcgg
cgcgtgtgtgaagggttggcagtggacaatgtcgaatatgcggtagagccgaaatttgac
ggactggctgtcagtttatgttatgaaaatggaatttttaaaaccggtgcgacacgtggc
gatggctatacgggcgaaaatatcacactgaatctgagaacgattcgatcgattcctttg
tcgctgccggtcttaaatccgccatcatggctggaagtgagaggcgaagtattaatgttg
agagcggatttcctggctttgaatcagcgtcaatccgctaaaggtgaaaaagaatttgcc
aatccgcgcaatgcggcagcagggtcgttacgtcaactggatcctggtattaccgcaacc
cggcgtttaactttctttgcttatggcgttggagaatatcaggattgccacatgccgctg
gataaacacagtcatgtaatggcctatcttgcgtcgttacattttcccattgccaaagaa
ggtggcgtagttaaagggttgcaagaattgttagcctattatcaaaccattgaggtgcag
cgcgtgcgcttgccgtatgatattgatggcgtggtgtataaagtcaattccttggcacag
caggaacggttaggattcgtatcgcgcgcgccacgatttgcgctggcgcacaaatttccg
gcacaggaagcgatcacgcaactgtcgggtattgagattcaggttggaagaaccggcgcc
ttgacaccggttgcgcgcttaaaaccggtgtttgtcggtggcgtgaccgttacgaatgcc
actttacacaatgcggatgaaattgaacgcaaggatgtgcgcattggcgataccgttatc
gttcgccgtgcgggtgacgtgattccggaaatcgtatcggtaatactggaaaaacgtccg
gtagatacgcaggtttttgtgatgccggaacattgcccggtatgtggcgctaaggccgtg
cggcttgtggatgaggcggtatcacgttgtaccggtggattattttgcccggcgcagcgt
aaacaggcaattttgcattttgcttcacgtcgggcgatggatattgagggcttgggcgat
aagctggttgagcagatggtcgatcgggcaattatccgtaccccggcggatttgtataaa
ttgggattaggtgcgttggctgatctggaacgcatggcggagaaatcagccggtaatatt
ttgcgcgcgatagaaaaaagtaagcatacgacattagcaagatttatctatgcattgggg
attcgtaacgttggagaagccaccgcaaaggatttggcggcgcattgtggcagcctcgac
cgcttgattgaagccggtagtgagcgtttgcaacaaattccggatgtgggtccggtggtg
gcgcaaagcatcgcggatttctttgccgaagcccataatcgtgaagtgattgagcagctt
cgtgcctgtggagtgtactggaatgagcatgagggaatatccgttttagccggagaagca
agacccttgcagggcaagacgtttgttttaaccggaacgctaccgattatgagccgtgaa
gaagccaaagaaaagattgaattgctgggggggaaagtgagcggcagtgtttccaagaaa
acggattatgtcgtcgtgggtgcggatccgggcagcaaatacgacaaggcgctgagcttg
ggcattgctgtgcttgatgaagcgggattgctggaattactgcaagaacgctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (31)   

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