KEGG   Nitrosospira lacus: EBAPG3_004265
Entry
EBAPG3_004265     CDS       T04907                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
nlc  Nitrosospira lacus
Pathway
nlc02024  Quorum sensing
nlc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nlc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EBAPG3_004265
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    EBAPG3_004265
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nlc03019]
    EBAPG3_004265
   03036 Chromosome and associated proteins [BR:nlc03036]
    EBAPG3_004265
Messenger RNA biogenesis [BR:nlc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     EBAPG3_004265
Chromosome and associated proteins [BR:nlc03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    EBAPG3_004265
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: ARO87051
UniProt: A0A1W6SMP4
Position
complement(957452..957697)
AA seq 81 aa
MSAKGQLLQDPFLNTLRKEHIPVSIYLVNGIKLQGHIDSFDQYVVLLKNTVTQMVYKHAI
STVVPARAVSIPFEAPAIPDA
NT seq 246 nt   +upstreamnt  +downstreamnt
atgagcgcaaaagggcaattgttacaagacccatttctgaatacattgcggaaggaacat
attccagtgtcgatttatctggtaaacggtatcaagctacaaggtcatattgattcgttt
gaccagtatgtcgtgttgctgaaaaataccgtcacgcagatggtatacaagcacgcaatc
tccaccgttgtccccgccagggcagtttccattccatttgaggcacccgctatacctgat
gcttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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