KEGG   Nitrosopumilus maritimus: Nmar_0433
Entry
Nmar_0433         CDS       T00626                                 
Name
(GenBank) 3' exoribonuclease
  KO
K12589  exosome complex component RRP42
Organism
nmr  Nitrosopumilus maritimus
Pathway
nmr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nmr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Nmar_0433
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nmr03019]
    Nmar_0433
Messenger RNA biogenesis [BR:nmr03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     Nmar_0433
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     Nmar_0433
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-ProteinID: ABX12329
UniProt: A9A5D0
Position
385645..386463
AA seq 272 aa
MTSHTVIDELKRNQILELLEQGKRVDGRALDESREVSIETNAIPKANGSARVRLGDTEVV
CGVKIQPDRPFPDTGDKGLFICTAELLPLSHPTVETGPPGPEVIELARVVDRGIRESHMI
DVSQLVIEKDKSVIGVFADNVVVDYDGNLFDACSYAATAALLSSKSPKWNWVDDAPALVE
GEEVDVPITTIPVSVTMGKIGNHIIVDPNGDEWASMDARITITSDSDGNICALQKGGDDG
FTQDEIVQCGEISVRVGAKIREKLKAAQQGGQ
NT seq 819 nt   +upstreamnt  +downstreamnt
atgacatcacatacagttattgacgaactaaagagaaaccaaattcttgaattattagaa
caaggaaaaagagtagatggtagagctcttgatgaatcaagagaagtttctattgaaact
aatgccattccaaaagcaaacggttctgcaagagttcgattaggcgatactgaagttgta
tgtggcgttaaaatccaaccagacagaccttttccagacactggtgacaaaggacttttc
atttgtactgctgaactattaccactttcacatcctacagttgaaacaggacctccggga
cctgaagtaattgaactagctagagttgttgatagaggaatcagagaaagtcacatgatt
gatgtatctcaattagttattgaaaaagacaaatctgtaattggtgtctttgcagacaat
gttgttgttgattatgatggtaatctatttgatgcatgttcttatgctgcaactgccgca
ttactctcatcaaaaagtcctaaatggaattgggtagacgacgcacctgcactagttgaa
ggtgaagaagttgatgttccaatcactacaattcctgtatctgtaaccatgggaaagatt
ggaaatcacatcatagttgatcctaatggtgatgaatgggcaagtatggatgcaagaatt
acaattactagtgattctgatggaaacatctgtgccttacaaaaaggtggagatgatggg
ttcacacaagatgaaatcgttcaatgcggtgaaatctcagtcagagtaggcgcaaaaata
agagaaaaattaaaagcagctcagcaaggaggtcagtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (29)   

Download RDF
DBGET integrated database retrieval system