KEGG   Nocardia nova: NONO_c22490
Entry
NONO_c22490       CDS       T03032                                 
Symbol
recQ2
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
nno  Nocardia nova
Pathway
nno03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NONO_c22490 (recQ2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nno03019]
    NONO_c22490 (recQ2)
   03400 DNA repair and recombination proteins [BR:nno03400]
    NONO_c22490 (recQ2)
Enzymes [BR:nno01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     NONO_c22490 (recQ2)
Messenger RNA biogenesis [BR:nno03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     NONO_c22490 (recQ2)
DNA repair and recombination proteins [BR:nno03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      NONO_c22490 (recQ2)
SSDB
Motif
Pfam: DEAD Helicase_C_2 Helicase_C ResIII RecQ_Zn_bind RNase_T DUF604 RNase_H_2
Other DBs
NCBI-ProteinID: AHH17047
UniProt: W5TCR8
Position
complement(2453824..2459139)
AA seq 1771 aa
MGHDSRATCAGGIVHSSTLPMEPHMTISSRPLPPALETAHRILTENGPLAASDVRQRLRE
EGYNQSIDRLQQLPDRFPSHFHVTEDGHLAIAIAPESLVDPGEPHGEIADWYAPVIPDRV
PLDRVAVLDLQTTGFSAASDSITHLALVRCDGQLLADVAIEETGADQRPRDHATATESLE
AALRILGDRLTGIDLLIGHNLVAFDLPFLEAAAQRAELDLPPLPPSTDTLHLALLVDVAM
PNRQLPDLVQRYGISMDGPPGAKSNAVATAAVVHALVAEVDVNDPSWQLAIAILETRGDP
LALLLPRLASHPTLATLNRPPDPLLTPTAPPASDAWSAARDTFATLRERWDLRSRPAQQD
MAHAVSEVMDHGGRLAVEAPTGTGKSLAYLLPALGRASRPRQSVVIATATKALQTQLRDE
AKRLHDEGLLCAPFRQIQGVGNYVCTRELEDALSDSETSGLALAVGVRSIASSPTGTWDD
VTDDGIRRSDTRYARTRARLRTNAAGCERSKCTWSSICPLTQQIAGIDNTPGVVSVNHAL
VASWVRIEREGGHSPGNILAEDRADLVFDEAHALEDSFTGAWTERVDALELDILINSLSR
RSRLIRAIRSNAESNAEVTAAIQSIAVSSAQIRSSGEGLAQAIATYLHEYAGKSDGVVIR
SGVVDNRPEFRAVRQAASGTRYWLIQLAIALRALRESLADVSGTGSAQQRLRGHSDRLNN
AINLLETLGPLPDNHRWVYRLEADKNDVLDWTFERLPIHIFPEFQQFVVDRVRSTTLCSA
TLTVEHKFDYMASRLGVRIDPDPDDSAFCALRLPSPFDYGTQACVVLTNHLPVPIPVNER
EFCEEMAADQVGFLSLSGGKALSLFASRSRMETVADSVRAKSRELADRGVDLLVQGELGR
SQIAQRFRTEPGTVLYGLKSYWEGFDAPGETLSYLFLEKPPYPHPDDPLVSARQRAIAER
GGDPFLDYVLPMTAIQFTQGFGRLIRSESDIGAVLVCDRRLHAPTQARRVLLGSLPDPAL
HEAVDRDDAWTRAIEFVTGTAPDLESAITLGRDDISKLLESLRLVEGEDPTSKLIEAAEK
IFGIKALHPTQLEVMRAIVEGRDVLAVLPTGFGKSLCFQLPALLAPQARATVVVSPLIAL
INDQVNDLRGRRGIRPVQGITGSTSRVVQTEILRDTANGRVRLLYVSPERLARDPVLRGA
LGRQQLNRVVVDEAHCISVWGHDFRPEFRQVPSSVASFETRPPRTGLTATATHEVAGDIT
GAMDMHDPIVVREPSDRPNLRFRVIECADERDRVRELLRFIAWAGHNAGIVYVTRRALAE
EISALLRRAGHAARPYHAGLLPEQRDAAQEDFDSDTTRIIVATKAFGMGINKPNIGWVVH
FDLPDSLDGYAQEAGRAARSPEVEGDCLLLYTKRDIRRQKALVEKHEAKADADLAQRLLN
ELWACPVRGVSRVFDMDELSDVLGTDDDQINVLLAQLERVDVLKQGLDCSARGTVDIGFR
EPEDEDERHLYRELFYKHHRARPNVRIQFDLQQLEQEYGYDPDRLEQQLISWSLDRLLTF
SSSRRLRRVNLFERTAPQEEMERESARWKRWQQRRVQAMIDYATRSTECRRIVVGRHFGD
DVVDCVHRGIVACDVCSREPAPWSSIPDHQVADPELLVNAELTVLQSVAWASAFRRGSYG
EASLRAAVLGQESLGPGLPLGAGVLSCPQFGALRHVRNGEKKWNDAVGKLIQQGMVDRRI
VERESSSTKYQSLVLTSVGAQALGTEVPLND
NT seq 5316 nt   +upstreamnt  +downstreamnt
atgggccatgactcacgcgcgacatgcgctggaggcatcgttcattcgtccacgctccct
atggagccgcacatgacaatttcgagccgtccgctacctcccgccctagagaccgcgcat
cggatactcaccgaaaacgggcccctcgctgcgagtgatgtccgccagcgactgcgggag
gaaggctacaaccagtcgatcgacaggctccagcagctgcctgatcggtttccgagtcac
ttccacgtcacagaggacggtcacctagcgatcgcaattgccccggagagcctcgtcgat
ccaggtgagcctcacggagagatcgcagactggtatgccccggtgatccccgatcgtgtt
ccgctcgatcgggtcgccgtgctggatctgcagacgaccggattcagcgcggcgagcgat
tccattacccacctcgcgctcgtccgctgcgatggacagctgctggccgacgtcgcaatc
gaggagactggtgcggaccagcggcctcgcgaccacgccacggcaacggagtcactcgag
gcagctctgcgcatcctcggtgaccgactcaccgggatcgacctgctcattggccacaat
ctcgtcgcattcgatctgccgttcctcgaggcagcggcgcagcgagctgagctcgacctt
cccccacttcctccgagcaccgacaccctccacttggcactgctcgtcgacgtcgcgatg
cccaatcgccaattgcccgatctggtccagcgatacgggatcagtatggacggtccgcct
ggagcgaagtccaacgctgtggcgacggccgcggtggtccacgcactcgttgccgaagtg
gatgtgaatgacccgagctggcagctggcgattgcgatcctcgagactcgaggcgaccca
ctcgcgttgctgctcccccgcctggcctcccacccgaccctcgcgacattgaatcgccct
ccggatccattgctcactccaacggcacctcctgcctccgacgcctggtccgccgcgcgg
gatacgttcgccactctccgggagcggtgggacctgcgatcccgccctgcgcaacaggac
atggcccatgcggtctccgaggtcatggatcacggtggacggttggcagtcgaagccccc
accgggacaggtaagtcgctcgcgtacctgttgccggctctcggacgcgcgtcacgcccg
cgccagtcagtagtgatcgcgacggcaacgaaggcattgcagacacagctgcgtgatgag
gccaagcggctacatgacgagggtctgctgtgcgcgccgttccgccagatacagggtgta
ggcaattacgtctgcacacgtgagctggaggacgcgctcagcgacagtgagacgtccggt
ctcgcactcgctgtgggcgttcgttcaatcgcttcctcgccgacgggaacctgggacgat
gtcaccgacgacggcatccgccgatcagacacgcgctacgcgcgaacccgcgctcgcctg
cgaacgaatgccgccgggtgcgaaaggtcgaaatgcacgtggtcttcgatatgtcccctg
acacagcagatcgcggggatcgacaacacgcccggagtcgtctctgtcaaccacgctctt
gtcgccagctgggtgcgaatcgaacgagaaggcggacactcgccaggaaacatcctggcc
gaagatcgcgccgatctggtgttcgacgaggctcacgcactcgaggattcattcaccggt
gcctggaccgaacgagttgacgcgctcgaactcgacatcctcatcaacagcctgtcgcga
cgttcccggctgatcagggcgattcggtcgaatgccgaatcgaatgccgaggtaacagcc
gcgatccaatccattgcggtgagctccgctcagatccgttcctcgggcgaggggcttgca
caggcgatcgcaacctatcttcacgaatacgccgggaaatccgacggcgtggtcatccgc
tccggcgttgtggacaatcggcccgagtttcgcgcggtccgtcaggcagcgtccggaacg
cggtattggctcatccagctggctattgcgctcagggcgctgcgtgagtctcttgctgac
gtctctggcacgggttcggcccagcaacgcctccgcggccactccgatcgactgaacaat
gcgatcaatctcctcgaaacgctcggaccactgcccgacaatcaccgatgggtgtaccgc
ctcgaagccgacaagaatgacgtcctggactggacattcgagcgtttgccgatccacatc
ttccccgaatttcaacagttcgtggtagatcgagtgcgttcgacgacgctgtgttcggcc
accctcaccgtcgagcacaaattcgattacatggcatcgcgactgggagttcgaatcgat
ccagaccccgacgattccgcgttctgcgcactgcgtctcccatctcccttcgactatggc
acgcaggcctgcgtcgttctcaccaaccaccttccggttccgatccccgtgaacgaacgc
gagttctgcgaagagatggcagccgaccaggtcgggttcctgtccctgtccggaggaaaa
gcactcagtctcttcgcatctcgatctcgaatggagacggtcgccgacagcgttcgcgcc
aaatcacgcgagcttgccgatcgtggcgtcgacctgctcgtgcagggtgagctcggccgt
tcgcagatcgcacaacgattccgaaccgagcccggaactgttctctacggtctgaaatcc
tactgggaaggcttcgacgcccccggcgagactctttcctacctcttccttgaaaaaccg
ccatatccacatccggacgaccctttggtgtcagcccgtcaacgtgctatcgccgagcgc
ggtggagacccattcctggactacgtgctccccatgacggccatccagttcacccagggg
ttcggtcgactcattcggtccgagtccgacatcggcgccgtactcgtctgcgatcgacgc
ctgcacgcaccgacccaggctcgtcgggtcctgctcggatcactacccgatcccgctctc
cacgaagccgtcgaccgtgacgacgcctggacgcgcgcaatcgaattcgttacagggacc
gcgcccgacctcgaatccgcgatcactctcggacgcgatgacatcagcaaattgctcgag
agcctgcgcttggtcgaaggggaggatccgacatccaagctgatcgaggcagccgaaaag
atcttcgggatcaaagccctccacccgacccaactggaggtcatgcgtgccatcgtcgag
ggccgcgatgtgctcgccgtattgccgaccggcttcggaaagtcgctctgcttccagctc
ccagcactactcgcacctcaggcgcgcgctaccgtcgtcgtctcaccgctgatcgcactg
atcaatgatcaggtcaatgacctacgagggcgtcgcggaattcgaccggtccagggaatc
acggggagtacgtctcgggtcgttcagaccgagatcttgcgggacacggccaatggccga
gtgcggctcctctacgtctcgccagagcgcctggctcgcgacccggtgctgcgcggcgcg
ctgggacgacagcaactcaatcgtgtcgtcgtcgatgaggcacactgtatctcggtctgg
ggtcacgattttcggcccgaatttcgccaggtcccatcgtcagtggcgtcattcgagacc
agaccgccacggaccggcctcaccgcgactgcgacccatgaggtggccggcgacatcacc
ggcgcaatggatatgcacgaccccatcgtggtgcgcgaaccgagcgatcgaccgaatcta
cgattccgcgtcatcgaatgcgcggacgaacgggaccgtgttcgtgaactgttgcggttc
atcgcctgggccgggcacaacgcgggcatcgtctacgtgacgagacgggctcttgccgag
gagatctcggcgctgctacgccgcgccggacatgcggcgaggccttatcacgcagggctg
ctaccggagcaaagagacgcggcacaggaggatttcgactccgacacgacacgaatcatc
gtggccaccaaagctttcggaatgggaatcaacaagccgaatatcggctgggttgtccac
ttcgatctgcccgattctctcgatgggtacgcgcaggaggcaggtagagccgcacggtcg
ccggaggtcgagggtgattgcctgctgctctacaccaagcgcgatatcagacgacagaag
gcgttggttgagaaacatgaggccaaggccgacgccgatctcgctcagcgccttctgaat
gaactatgggcatgccctgtgcgcggtgtgagtcgggtattcgacatggacgagctttcc
gatgtgctcgggaccgacgacgaccagatcaatgtactgctcgcacagctcgagcgggtc
gatgtcttgaagcagggactggactgctcggcgcgcggaacggtggacatcggcttccgc
gagcccgaggacgaggacgagcgtcacctctaccgggagctcttctacaagcatcaccga
gcgcgtcccaacgttcgaatccagttcgatctacaacagctcgagcaggagtacggctac
gaccccgacaggctggaacagcagctgatctcgtggtcactcgatcggctactgacgttc
tcgagttcccggcggctgcggcgtgtgaacctcttcgaacgcactgcgccacaagaagaa
atggagcgcgagtccgcccgatggaagcgttggcaacagcggcgggtccaagccatgatc
gactacgccaccagaagcaccgaatgcaggaggatagtggtcggccggcatttcggtgac
gacgtcgtcgattgcgtacaccgaggcatcgtggcgtgcgacgtgtgtagtcgtgaaccc
gctccctggtcttcgattcccgaccatcaagtggctgatccggagcttctcgtcaacgcg
gagctgaccgtgctgcaatcagttgcctgggcgtccgccttccgccgcggttcttacggg
gaggcgagtttgcgcgcggccgttctcgggcaagaatcactcggtccagggctaccgctc
ggtgccggcgttctcagttgtccgcagttcggtgcactgcgacatgtccgcaacggcgag
aagaaatggaacgacgccgtgggcaagctgattcagcagggcatggtcgaccggcgaatc
gtcgagcgcgaaagttcatccaccaaataccaatcgctggtgttgacctcggtaggcgcc
caggcactcggaaccgaggtaccactgaatgattga

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