KEGG   Nocardia nova: NONO_c63660
Entry
NONO_c63660       CDS       T03032                                 
Symbol
deaD
Name
(GenBank) putative cold-shock DEAD box protein DeaD
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
nno  Nocardia nova
Pathway
nno03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NONO_c63660 (deaD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nno03019]
    NONO_c63660 (deaD)
   03009 Ribosome biogenesis [BR:nno03009]
    NONO_c63660 (deaD)
Enzymes [BR:nno01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     NONO_c63660 (deaD)
Messenger RNA biogenesis [BR:nno03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     NONO_c63660 (deaD)
Ribosome biogenesis [BR:nno03009]
 Prokaryotic type
  rRNA helicases
   NONO_c63660 (deaD)
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 UvrA_inter
Other DBs
NCBI-ProteinID: AHH21136
UniProt: W5TVC8
Position
complement(6854621..6856498)
AA seq 625 aa
MNNSSVDSVPSGGDDRPEGADERNHEGPADAATGYRDGSAAPAASESGAAEVSEPTFADL
GIDDRLLAAIADVGYESPSPIQAATIPPLLSGADVVGLAQTGTGKTAAFAIPILMGLDKR
PKPPQALVLAPTRELAIQVAEAFGRYSAHLPGIHVLPIYGGQNYAVQLQGLRRGAQVVVG
TPGRVIDHLERGTLDLTQLRYLVLDEADEMLKMGFQEDVERILRDTPAEKQVALFSATMP
SVIRKISKQYLKDPVEITVKSKTSTNTNITQRWVHVSYQRKLDALTRILEVEPFEAMIIF
VRTKQATEELAEKLRARGYSAAAINGDIAQNQRERTIGQLKSGTLDILVATDVAARGLDV
DRISHVVNYDIPHDTESYVHRIGRTGRAGRTGEALLFVAPRERRLLDAIERATRQPLTEM
QLPSVDDVNAQRVVKFHDAITENLASPNLALFRKLIEDYEAEHNIPLADIAAALAIGGHD
GENFFMEPEAEPIRPPRRERAPREERERRSEGPQRHRATGADMATYRIAVGKRHRVVPGA
IVGAIANEGGLRRSDFGHISIRPDHSLVELPADLPSETLDALRRTRISGVLIQLQLDQGP
PSHRPIGRGPRREGGRKHDRRKPRS
NT seq 1878 nt   +upstreamnt  +downstreamnt
atgaacaactcatcggtcgacagcgtacccagcggcggggacgacaggcccgaaggcgca
gacgagcgcaaccacgaaggtcccgcggacgccgccaccgggtaccgcgacgggagtgcg
gcgcccgccgcgtccgaatcgggcgcggccgaggtgtccgaaccgacgttcgccgatctc
ggcatcgacgatcggctgctcgcggccatcgccgacgtcgggtacgagtcgccgtcgccg
atccaggcggccaccattccgccgctgctgtccggcgccgatgtcgtcggtctcgcccag
accggtaccggtaagaccgccgccttcgccatcccgatcctgatgggcctggacaagcgg
cccaagccgccgcaggcgctggtcctggcccccactcgcgaactggcgatccaggtcgcc
gaggcgttcggccggtactcggcgcacctgccgggcatccacgtgctgccgatctacggc
ggccagaactacgcggtgcagctgcagggtctgcggcgcggcgcgcaggtcgtggtcggc
acgcccggtcgtgtcatcgaccacctcgagcgcggcaccctcgatctgactcagctgcgg
tatctggtcctcgacgaggccgacgagatgctgaagatgggtttccaggaggacgtcgag
cgcatcctgcgtgacactccggccgaaaagcaggtcgcgctgttctcggcgaccatgccg
tcggtgatccgcaagatctccaagcagtatctgaaggatccggtcgagatcacggtcaag
tccaagacctcgaccaacaccaacatcacccagcgctgggtccacgtctcctaccagcgc
aaactggacgcgctgactcgtatcctcgaggtcgagccgttcgaggcgatgatcatcttc
gtgcgtaccaaacaggccaccgaggagctggccgagaagttgcgcgcccgtggatactcg
gccgcggccatcaacggtgacatcgcgcagaaccagcgcgaacgcaccatcggccagctg
aagtccggcaccctcgacatcctggtcgccaccgatgtggccgcccgcggactcgatgtc
gaccgcatctcgcacgtggtcaactacgacatcccgcacgacaccgagtcctatgtgcac
cgcatcggccgcaccggacgtgccgggcgcacgggtgaggcgctgctgttcgtcgcgccc
cgcgagcgccgcctgctcgacgccatcgaacgcgccacccgccagccgctgaccgagatg
cagctgcccagcgtcgacgatgtgaacgcccagcgcgtggtcaagttccacgatgcgatc
accgagaatctcgcctcgccgaatctcgcgctgttccgcaagctcatcgaggactacgag
gccgagcacaacatcccgctggccgatatcgccgccgccctggcgatcggcggtcacgac
ggcgagaacttcttcatggagcccgaggccgagccgatccggccgccccgccgtgaacgc
gcccctcgcgaggagcgtgagcgccggtccgaaggtccccagcgccaccgtgccaccggc
gccgacatggcgacctaccggatcgcggtcggtaagcgccaccgcgtcgttcccggtgcg
atcgtcggcgccatcgccaacgagggcgggctgcgtcgcagcgacttcggtcatatcagc
atccggcccgaccacagcctggtggaactgcccgccgatctgccgtcggagaccctggac
gcgttgcgccggaccaggatcagcggtgtgctgatccagctgcagctcgatcagggcccg
ccgtcgcatcggccgatcggccgcggcccgcgccgggagggcggccgcaagcacgaccgc
cgcaagccccgcagctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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