KEGG   Nelumbo nucifera (sacred lotus): 104587716
Entry
104587716         CDS       T04131                                 
Name
(RefSeq) protein RRP6-like 2
  KO
K12591  exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
nnu  Nelumbo nucifera (sacred lotus)
Pathway
nnu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nnu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104587716
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nnu03019]
    104587716
Messenger RNA biogenesis [BR:nnu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     104587716
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC PMC2NT RRP7
Other DBs
NCBI-GeneID: 104587716
NCBI-ProteinID: XP_010243731
UniProt: A0A1U7Z9E7
Position
Un
AA seq 931 aa
MQMGSEAMEMGMEKSSKKKAETLQALATGPLSSSIAKLSGSSRGIPSDKDFHFFYNFDEF
KTPIREIAEKSESLLKSIGSSRSLWGKELIFPEDSEEAYDWLVNVSDEVLERCDVSMDEF
QRLRKKEEESGRSMSSMNTDDGFQLVYGKKKKGVSRSMEKKEEHDSNPSTAVKVASRDKK
TTGARPRVPFHIPTIPRPQDEFSILVNNSNQPFDHVWLRKSEDGSRFLHPLEELSERDFV
DRKTGNVEPVKPLPLESTPFKLVEDVKDLKELAAKLREVNEFAVDLEHNQYRSFQGMTCL
MQISTRMEDFVVDTLKLRVHIGPHLREIFKDPSKKKVMHGADRDIVWLQRDFGIYICNLF
DTGQASRILQLERNSLEYLLHHFCGVTANKEYQNADWRLRPLPDEMIRYAREDTHFLLYI
YDLMKARLFALSADSENGDALLLEVYKRGYDICLQLYEKELFTDTSYLYIYGLQGANFNA
QQLAIVNGLCEWRDVVARAEDESTGYILPNKALLEIAREMPLTNGKLRRLVKSKHPYVER
NLGTVVSIIRSSIQNAAAFEVVAEQLKKGRLEMVHEENTETVQNGTGTLSSGNLTSMQNA
SAQTEMINSNSGTGVNWKMNKYPVASLQVKEEPLELGGSVVECGRDEQRQHELLGETGKI
ENERGSCSSQLPNENPITLRHMDTGATIQVLKKPSCSFGALLGNSSSKRKLNQVQKNMAE
LKVEQIKLSVNLPFHTFSGGDEHSKSLTQESIKPLKSLDAEEAVARPPGVTDFEEIISLE
IDSNDQEDCVSTEARNGLEHRENYSPEISVLDTDIGGKPMSLSDLSSSFQKCFQSINQSR
NNREIQRSADSDGGLQLKPFDYAAARKHVTFGGDQKEETGMEGEGKNLHDSGGRNNTKAT
SSVPKEESNDSQQARRRQAFPATGNRSATFC
NT seq 2796 nt   +upstreamnt  +downstreamnt
atgcaaatgggcagcgaagcaatggagatggggatggagaagtcatcgaagaaaaaggcg
gagactctgcaagcgttggctactggtcctttatcatcttcgattgcgaagctttcaggt
tcttcaagaggtattccttcggacaaggattttcatttcttttacaacttcgacgagttc
aagacacctattagggaaatagccgaaaagtctgaatcgttgttgaaaagcattggttcg
tcgaggtcactttgggggaaagaattgatttttccggaggattcagaggaagcttatgat
tggctggttaatgttagtgacgaggtccttgagagatgtgatgtttcgatggatgagttt
cagagattgaggaagaaagaagaggaaagcgggaggagtatgagttcgatgaatactgac
gatgggtttcagttggtttatgggaagaagaaaaagggagttagtcgtagtatggagaaa
aaggaggagcatgattcaaatccttccacggcggttaaagtggcttcgagggacaaaaaa
actactggggcacgaccgcgcgtgccattccatataccaaccattcctcgacctcaagat
gaattcagtatattggttaacaactcgaatcagcctttcgaccatgtctggttgcgcaaa
agcgaggatgggagtagatttttacatcctctggaagaactctcagagcgggattttgtt
gatagaaaaactgggaatgttgaaccagtaaaaccactcccattagagagtacacctttt
aagcttgtggaagatgtcaaggatttgaaggagttagctgccaaattgcgtgaagtgaat
gagtttgcagttgatttggaacacaaccagtataggtccttccaaggaatgacttgcttg
atgcaaatttctacgagaatggaagattttgtagtagacacactaaaacttcgtgttcat
attggtcctcatctaagggaaatattcaaagacccctctaagaaaaaggtcatgcatgga
gcagatcgggatatagtgtggctgcaacgggacttcggaatatacatctgcaatttgttt
gatactggccaggcttcaaggatattgcaattggagaggaacagtctggagtatcttctg
caccatttttgtggagttactgcaaacaaagaataccaaaatgcagattggagattacgc
cctctacctgacgaaatgatcagatatgcaagagaagatacacattttctgttgtacatt
tatgatctgatgaaagcaaggttatttgcattatctgccgactctgaaaatggtgatgct
ttgctgttagaggtatacaagcgtggttatgacatatgtctgcagctttatgagaaagag
ctctttacagacacttcatatctctacatatatgggttacagggggctaatttcaatgct
caacagcttgctattgttaatggtctttgtgaatggagggatgttgttgctcgtgcagag
gatgaaagtacgggctatatattgccaaataaagcattgcttgagatagccagggagatg
cccctcacaaatggcaagctgcgccgattggtgaagtcgaaacatccttacgttgagcgc
aatcttggtactgtggttagcataatcaggagttcaatccaaaatgctgctgcttttgaa
gttgttgctgaacagctaaagaagggtcgtttagaaatggtacatgaggagaacacagaa
acagttcaaaatggaaccggaaccttatcttcaggaaatctaacaagcatgcaaaatgca
tctgctcaaacagaaatgattaatagcaatagtggcactggagtaaactggaagatgaac
aaatatccagtggcttctctgcaagtcaaggaagagcccttagagcttggtggtagtgtt
gttgagtgtggtagggatgaacagaggcagcatgagctacttggtgaaactggaaaaatc
gagaatgaaaggggcagctgttcatcacaacttccaaatgaaaatcccatcacattgagg
catatggatactggggcaactattcaagtgttgaagaagccaagctgttcttttggagca
ctgctagggaattcttcctcaaagagaaagcttaatcaggttcagaagaacatggcggag
ctcaaggtggagcaaatcaagttatctgtaaatcttccatttcatacattctcaggcggg
gatgaacattcgaaatcacttacgcaggagagcattaaaccattgaaaagtcttgatgca
gaggaagccgttgccaggccacctggtgttactgactttgaagagataatttcacttgaa
attgattcaaatgaccaggaagattgtgtctcgacagaagctagaaatggtttagaacac
agagaaaattatagtcctgaaatttctgttttggatacagatataggaggtaagcctatg
tctctttctgatttatcctcgagtttccagaaatgcttccagtcaataaatcagtccaga
aacaatagagagattcagagatccgcagattcagatggtggtttgcagttgaaaccattc
gattatgcagcagcaagaaaacatgttacatttgggggggatcaaaaggaagaaactgga
atggagggtgaaggcaaaaatctgcatgactcggggggaaggaataacactaaagctact
agtagtgttccaaaagaagaaagcaatgattctcaacaggccagacgacgtcaggctttt
ccagccacggggaaccgtagtgcaacattctgctaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (26)   

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