KEGG   Nelumbo nucifera (sacred lotus): 104606161
Entry
104606161         CDS       T04131                                 
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
nnu  Nelumbo nucifera (sacred lotus)
Pathway
nnu03018  RNA degradation
nnu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nnu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104606161
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104606161
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nnu03019]
    104606161
   03041 Spliceosome [BR:nnu03041]
    104606161
Messenger RNA biogenesis [BR:nnu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     104606161
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     104606161
Spliceosome [BR:nnu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    104606161
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 104606161
NCBI-ProteinID: XP_010269536
UniProt: A0A1U8APK3
Position
Un
AA seq 148 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREDGTGRSAKGIGRGQDDG
SSKGAGGRGRGGSGGRSGANRGGGRGRG
NT seq 447 nt   +upstreamnt  +downstreamnt
atgctccctctttcactactgaagacagcacagggtcatcctatgctggtggagctgaag
aatggagaaacttacaacgggcatttggtgaattgcgacacttggatgaacattcatcta
cgtgaagttatctgtacttcgaaagatggagacaggttttggcgaatgccagaatgctat
atccgtgggaatacaattaagtatcttcgagttccagatgaggtaattgataaagttcag
gaagaaaccaagagccgtgcagataggaagcctcctggagtaggacgtgggaggggaaga
gggagagaggatggtactgggaggtcagcaaaaggcattgggcgtggccaagatgatgga
agcagtaaaggtgcaggtggacggggtagaggcggatctggtggcaggagtggtgcaaat
agaggtgggggacgtggtcgtggctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (2)   
   Pfam (2)   
All databases (38)   

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