KEGG   Nelumbo nucifera (sacred lotus): 104606826
Entry
104606826         CDS       T04131                                 
Name
(RefSeq) exosome complex exonuclease RRP44 homolog A
  KO
K12585  exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
nnu  Nelumbo nucifera (sacred lotus)
Pathway
nnu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nnu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104606826
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nnu03019]
    104606826
Messenger RNA biogenesis [BR:nnu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     104606826
SSDB
Motif
Pfam: RNB PIN_4 OB_Dis3 Rrp44_CSD1 Rrp44_S1 CSD2 Toxin_R_bind_C GerE OB_RNB
Other DBs
NCBI-GeneID: 104606826
NCBI-ProteinID: XP_010270516
UniProt: A0A1U8B3B2
Position
Un
AA seq 935 aa
MLQSKSFVRKTKQGRVLKVVREHYLRDDIYCGASICKVCDSSAARLSSSASTILVVDTNV
VLNQIDLLENPAIDDVVVLSVVLEEVKNKNLSVYNRIRALCSNSLRNFFVFSNEHHKDTY
VKAMVGESPNDRNDRAIRVATQWYQNHLGGSIRVLLITNDKENKRKATEEGISAETVESY
VKSLGQPNLLDLLVHPTSEDVGMEEVEDLRPSKRKVIYSEHKPMSEITSGLHRGIYHQGK
LRVNRYNPFEAYVGSESIGDEIIIYGRGNMNRAFDGDIVAVELLPRDQWQEGKSLSIADD
EDEEEEDVHLVPSSADDAPRNANVVQSSAGDVNPISCRPCGRVVGVIKRNWHSYCGSLEP
MPMPAANGGVAHALFVSKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCLSRYPSGHYVR
TIGEIGDRDTESEVVLIENDIDSRPFSAQVLACLPPLPWSLSSEDLANPNRQDLRHLRVF
SVDPPGCKDIDDALHCTALSNGNFEVGVHIADVTNFVHPGTPLDDEASQRGTSVYLVERR
IDMLPKPLTEDICSLRSDVERLAFSVIWEMTPQAEIISTRYTKSAIKSCAALSYVEAQAR
MDDSRLMDPLTTDLRNMNALAKIMRLRRIERGALTLASAEVKFQIDTETHDPLDIGMYQI
REANQMVEEFMLAANVSVAEKILKHFPLCSLLRRHPIPTKEMLEPLLRTAVAVGLHLDVS
SSKALADSLDHAIGDDPYFNKLIRILATRCMTQAVYFSSGDLTPPEFHHYGLAAPLYTHF
TSPIRRYPDVIVHRLLAAALGIYRLPPIFQDRPQLTSIADNLNYRHRNAQMASRASVELH
TLVYFRKRPTDTEARIVKIRSNGFIVFVPKYGIEGPVYLTARGEKGGGEWFVDEEHQKVK
KTDGSIIYSVLQTVRIHLEVVEPQPNRPKLQLTLI
NT seq 2808 nt   +upstreamnt  +downstreamnt
atgttgcagagcaagtcgtttgttaggaagacaaagcaaggcagagtactaaaggttgta
agagagcattatctcagagacgatatctactgtggagcttcaatctgcaaggtctgcgat
tcttcagctgctcgtcttagttcatctgcttctacgatcctcgttgtcgataccaatgtt
gttctcaatcagattgacttgcttgagaatccggctatcgatgatgttgttgtgctatct
gtggttcttgaagaggtgaaaaacaagaatctttctgtttataacagaattcgtgccctt
tgcagcaattctctgcggaatttttttgtgttttcaaatgaacaccacaaggacacctat
gttaaggccatggttggggaaagtccaaatgatcggaatgatagagcaattcgggtagca
actcagtggtaccaaaatcatcttggtggcagtatacgggtattacttattaccaatgac
aaagaaaataaaagaaaagccactgaagaaggcatttctgcagagacagttgaatcatat
gtaaaatcacttggtcagccaaatttgcttgacctgcttgtgcatcctacctctgaagat
gtgggaatggaggaagttgaggatctgaggccttcgaaaagaaaggtcatttatagtgag
cacaagcccatgtcagagattacttctggtttgcatcgtggaatctaccatcaaggaaaa
cttcgtgttaatcgttataatccatttgaagcatatgttggaagtgagagtattggtgat
gaaataattatttatggtcggggtaacatgaatagggcatttgatggtgatatagtggca
gtggagctcttgccccgtgatcaatggcaagaggggaagtctctatctatagcagatgat
gaggatgaggaagaagaagatgtacacttggtcccaagtagtgctgatgatgctcccaga
aatgcaaatgtagtacaaagttctgcaggagatgtgaatcccatttcatgtcgtccatgt
gggcgtgttgttggtgttatcaagcgaaactggcactcttattgtgggtctttggagcca
atgcctatgcctgcagctaatggtggtgttgcacatgctttatttgtgtccaaagatcgc
agaattcctaagattcgaattcaaacacgacagcttgggaatcttttggacaagagaatc
attgtggctgttgattcttgggattgtttatcgcgatatccttctggtcactatgtaagg
accattggggaaattggtgacagagatactgaaagcgaggtggttttaattgagaatgac
atagactctagaccattttctgctcaagtgttggcttgcttgccacccttaccatggtca
ttatcctcggaagatctcgcaaatcctaacagacaggatttgcgacatttgcgtgttttt
agtgttgatcctccaggatgcaaggatattgatgatgcattgcactgtacagctctttca
aatggaaactttgaagtgggagttcatattgctgatgtaacgaattttgttcaccctggt
accccacttgatgatgaagcttcacagaggggtacatctgtttatcttgttgagcgtcga
attgatatgctaccaaaacccctaacagaagatatatgttctcttcgatctgatgttgag
aggctagccttttctgttatttgggaaatgacacctcaggcagagattatttccacaaga
tacacaaaaagtgccattaaatcctgtgcagcattgtcatatgttgaagctcaagccagg
atggacgatagtcgcctgatggatccattaaccactgatctgcggaatatgaatgcttta
gcaaagattatgaggctcagacgaattgaaagaggagctttaactcttgcttctgcagaa
gtgaaatttcaaattgatactgaaactcatgatcctcttgatattggaatgtatcaaatt
cgagaagcaaaccaaatggttgaggagttcatgcttgctgctaatgtttcagttgcagag
aaaatcttgaaacactttcctctgtgttcactgctcaggcgtcatcctattccaaccaaa
gaaatgcttgagcctttgctgcgtacagcagttgctgttggtctccatttggatgtttca
tcatcgaaagcacttgctgattcacttgatcatgccataggtgatgatccatactttaac
aagctgatccggatattggcgactagatgcatgacccaggcagtttacttctctagtggg
gacctcactcctccagagttccatcactatgggttggcagcacctctctatactcacttc
acatctcccatacgtagatacccagatgtcattgtgcaccggttgcttgctgcagccttg
gggatatacagacttccaccaatattccaagacagacctcagctaaccagtattgccgat
aatttgaattatcgacatagaaatgcccagatggccagccgggcatcggtagagctccac
acgcttgtctatttcaggaaaaggcctacagacactgaagccagaatagtgaagatacga
tcgaatggttttattgtttttgtacccaagtatggtattgaaggtcctgtatatttgact
gcaagaggtgagaagggaggaggggaatggttcgttgatgaggagcaccagaaagtgaag
aagacggatggtagcatcatttacagtgttctacagacagtgaggattcacctggaggtt
gtagaaccccaaccaaatcggccaaagcttcagctcacccttatttag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (33)   

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