KEGG   Nelumbo nucifera (sacred lotus): 104606906
Entry
104606906         CDS       T04131                                 
Name
(RefSeq) tetratricopeptide repeat protein SKI3
  KO
K12600  superkiller protein 3
Organism
nnu  Nelumbo nucifera (sacred lotus)
Pathway
nnu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nnu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104606906
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nnu03019]
    104606906
Messenger RNA biogenesis [BR:nnu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     104606906
SSDB
Motif
Pfam: TPR_1 TPR_2 TPR_11 TPR_16 TPR_17 TPR_14 TPR_8 TPR_12 TPR_19 TPR_7 TPR_9 TPR_6 TPR_15 BTAD Y2_Tnp
Other DBs
NCBI-GeneID: 104606906
NCBI-ProteinID: XP_010270637
UniProt: A0A1U8ART4
Position
Un
AA seq 1180 aa
MKNTEDEDRLRELQEAIYSDPDNYSHHYNLGLFLWEKGEDTKELKEKAVEHFVISAKLNP
NNSHTFQFLGHYYSRVSVDSQRASKCYQRALTLNPNDSESGEALCDLLDNEGKESLEIVV
CKEASEKSPRAFWAFRRLGYLQVHQKKWSEAVQSLQHAIRGYPTCADLWEALGLAYQRLG
MFTAAIKSYGRAIELENSRVFALIESGNILLTLGSFRKGVEQFRQALETSPCNIAAHYGL
ASGLLGLSKECVNSGAFSWGASLLEEASDIVKKSTFLAGNITCIWKLCGDIQLTYAKCLP
WVDEGQKLGTNEEAFRTSIFSWKRKCHLTAIAASHSYQRALHLAPWQPNIYIDIAISVDL
IYSLEERSRPESDVWQLPEKMSLGGLLLEGDNDDFWVSLGCLSDNNALKQHALVRGLQLD
VSLAVAWAYLGKLYRKQGEKQLARQAFDHARSIDPSLALPWAGMSVDTHSRGCTPEEAFE
SCLRAVQILPLAEFQIGLGKLAFDSGQLVSSQVFAAIQQAVQHAPHCPEAHNLNGLICEA
RSDYESAISAYKLAQCAISTLAISAPKSHFYDVSINLARSLCQAGNALDAAQECEFLKKE
GMLDSRVLQIYAISLWKLRKNDLALSVSRNLAASIPTMERTSGVVSISLICKLLYHISGQ
VSAITSIMKMPKELLQSSKISFIVSAINALDHSKRLESLIPSTRHVLKSYEEITGMHSLI
AISKLVRHGSEESLVIQSGVNHLRKALHMYPDSSLIRNQLGHLLLSSKEWKDIHIATRCS
IINPPDCPAVRGSKSGYGILGAAAVACYASSTTDQRFSFHTCKDQCMDGARALQKMQRWL
HQEPWNHNARYLLLLNVLQKARKERFPWHLCITLKRLVLSALFNEEQYLKKDASHIYQKF
QILLCASEISLQSGDHIDCINHATNASKLLVPDGNLFFAHLLLCRAYALQGDFPNMHKEY
LKCLQLKTNHEIGWICLKLIESRHKLQIDVNKIELNFEESLKENRSSWDKWMAIFNLLQG
QSSIWGHDYISAEEALAHACSLAGAESCLFLCHGAICMELARQQCGSQFLSLAVGSLTKA
QEASIIPLPIVSTLLAQAEASLGSRAKWEKNLRLEWFSWPPETRPAEVYFQMHVLARQAD
SISDSSYVESFQSSQKWLLRAIHLNPSCLRYWRVLQKWTG
NT seq 3543 nt   +upstreamnt  +downstreamnt
atgaaaaatacggaagatgaagatcggttaagagaattgcaggaagccatatattccgac
ccggacaattattcccaccattacaatctcgggcttttcttgtgggagaagggggaagac
acgaaggaattgaaggaaaaagcagtagagcatttcgtaatttcagctaaactaaatcca
aacaatagtcatacctttcagttcttaggccactactacagtcgagtatcggttgactca
caaagagcttctaagtgttaccagagagctctcactctcaatcccaatgattctgaatct
ggggaagctctgtgtgatttattggataatgaaggcaaagagagtttggaaattgttgtg
tgcaaagaagcttcagagaagtcaccgagggctttttgggctttccggaggctaggttac
ctgcaggtgcatcaaaagaaatggtctgaagccgtacagagccttcaacatgctataagg
ggttaccctacatgtgcagatttatgggaagctcttggtcttgcataccagcgactggga
atgtttacggctgctataaaatcatatgggcgagccattgaattggagaattcaagagtc
tttgcattgattgagagtggaaacattttgttgacgcttggttccttcagaaagggagtg
gagcaatttcgacaggctttggaaacttcaccttgcaacatagctgcacattatggtcta
gcttctgggttgcttggtttgtcaaaggagtgtgtaaattcaggtgcatttagttgggga
gcttcattactggaggaagcatctgatattgtgaaaaaaagtacgtttttagcaggaaat
attacctgcatttggaagttgtgtggtgatatccagcttacatatgcaaaatgtttgcca
tgggtggatgaaggccagaaattaggaaccaacgaagaggcttttagaacttccatcttt
tcctggaaaaggaagtgccatttgactgcaatagctgctagtcattcttatcagcgggct
ttacacttggcaccatggcagcctaatatctacatagacattgcaatctctgtagatctc
atttattcattggaggaaagaagtagacctgagtcagatgtttggcagctgcctgagaag
atgtccctaggtggcttgttgcttgaaggagacaatgatgacttctgggtgtctttagga
tgcttgtcagacaacaatgcattgaagcagcatgctcttgtcagaggattgcagttggat
gtatctcttgctgttgcatgggcatacctgggaaaactttacagaaaacagggtgagaag
cagttagctcgccaagcatttgatcatgctagaagcatagatccttcccttgcattacca
tgggcgggaatgtcagtggatacccattctaggggttgcacgccagaggaggcatttgaa
agctgcctacgggctgtacagatattgcctcttgcagaatttcaaattggtcttggaaag
cttgcttttgattcaggccaacttgtatcttcacaggtttttgcagccatccaacaggct
gtgcagcatgcacctcactgtcccgaggcccataatttgaatgggctgatttgtgaggca
cggtctgattacgagtctgcaatttctgcttataagctagcacaatgcgccatcagcact
ttagcaatcagtgcacctaagtcccatttttatgatgtatcaattaatctggccaggtcg
ctttgtcaggcaggtaatgcccttgatgcagcacaagaatgtgaatttttgaagaaagaa
ggtatgcttgatagcagggtcttacaaatatatgctatctccttgtggaagcttagaaag
aatgatctggccctctctgtgtcaagaaatctagcagcaagtattcccacaatggagcga
acatctggtgtagtctctataagtttgatctgtaaattgctgtaccacatttctgggcag
gtatctgcaataacaagcatcatgaaaatgcccaaggaattattgcagagctcaaagata
agttttattgtctctgcaattaatgctctggatcatagcaaacggcttgagtcgcttatt
ccaagtactcgtcatgttcttaaatcttatgaagagattactggaatgcattctctaatt
gccataagcaaactagttagacatggatcagaagagagcttggtaattcagagtggagtg
aatcacctcagaaaagctcttcacatgtatcctgatagtagtttgataaggaaccaactt
gggcatcttttactgtccagtaaagaatggaaagatattcacattgcaaccaggtgttcc
atcattaatcctcctgattgtccagctgtgagaggttcaaaatcaggatatgggatttta
ggtgctgcagctgttgcatgctatgccagtagcactaccgaccagaggttctctttccat
acgtgtaaggatcagtgcatggatggagcacgagcactgcaaaaaatgcagagatggttg
catcaagaaccatggaaccataatgccaggtacttgcttctacttaacgttcttcagaaa
gctcgtaaggagagatttccttggcatctatgtattacactaaagcggctagtattgtct
gctctctttaatgaagaacaatacttgaagaaagatgcttctcatatttatcaaaagttt
cagatcttactatgtgcttctgagatcagtttgcaaagtggggaccacattgactgtata
aatcatgctacaaatgcatcaaagcttctggttcctgatggcaatctcttctttgcacat
ttgctcttatgccgtgcctatgcactacagggggactttccaaacatgcacaaagagtat
ttgaaatgcttgcaacttaagacaaaccatgaaattggttggatatgcctcaagttaatt
gaatctagacataaactacaaattgatgttaacaagatagagttgaattttgaggaaagc
ttgaaggaaaacaggagttcatgggataaatggatggccatctttaatttactgcagggt
cagagttccatatggggtcatgattatatttctgctgaggaggctcttgcacatgcttgt
tcattggcgggtgctgaaagttgcctatttctctgtcatggtgctatctgtatggagctt
gctaggcagcagtgtggctctcaattcttatcgcttgcagtgggcagtctcaccaaggct
caagaggcctctatcattccattacctattgtttcaacattgctggctcaagcagaggca
agccttggttccagagcaaagtgggaaaaaaacctccgtcttgaatggttttcttggcca
ccagagacgaggccagctgaagtgtattttcagatgcatgtgcttgcaagacaggccgac
tctatttctgactcttcttacgtggagtcttttcaaagttcgcagaagtggcttctccgg
gcaattcatttgaatccgtcttgtttgagatactggagagttttgcagaagtggactggt
tga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (37)   
   KEGG ORTHOLOGY (1)   
   RefGene (33)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (15)   
   Pfam (15)   
All databases (61)   

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