KEGG   Nelumbo nucifera (sacred lotus): 104609870
Entry
104609870         CDS       T04131                                 
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
  KO
K14326  regulator of nonsense transcripts 1 [EC:3.6.4.13 5.6.2.3]
Organism
nnu  Nelumbo nucifera (sacred lotus)
Pathway
nnu03013  Nucleocytoplasmic transport
nnu03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:nnu00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    104609870
   03015 mRNA surveillance pathway
    104609870
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nnu03019]
    104609870
Enzymes [BR:nnu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     104609870
Messenger RNA biogenesis [BR:nnu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     104609870
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     104609870
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase DEAD Helicase_RecD UvrD-helicase nSTAND3 ATPase PhoH AAA_16 SRP54 AAA_22 Ribosomal_S13_N AAA_25 AAA_32 AAA
Other DBs
NCBI-GeneID: 104609870
NCBI-ProteinID: XP_010274587
UniProt: A0A1U8BE07
Position
Un
AA seq 1259 aa
MAAQTVVNNLYETASQPDTGGDAYTFLEFNTQGDDYDYPEFRELSQPIRSSVWPPTPDSV
SDSADRGVDLQADGGAVSSAPGSVLKGRGGSSSGSGSNQATVDAIASGMSGLSFEETGED
ENYEYGKGDFTEHACRYCGVQNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHK
EVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDL
SQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKPGVD
DEPQPVALKYEDAYQYQNVFAPLVKLEADYDKMMKESQSKDNVTIRWDIGLNKKRIAYFV
FPKEDNELRLVPGDELRLRYSGDATHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNH
GFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEAQVVRNTLPRRFGAPG
LPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAV
DQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVQHLDTSEKSELHKLQQLKDEQG
ELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPE
CLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPFRLQVQYRMH
PSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYL
NRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVAS
VDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLW
NSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGNGPGVVPNDNFGSIGSS
SSNSDKRGNRSKGSYMPFGAPNGTQKPGVHPAGFPVPRIPLPPFPGGPHSQPYAIPTRGA
VHGPIGAVPQVPQAGSRGFGAGRGNAGGPIGGHLSHQQGSQQSIGGLGSTFNFPSLDNPN
SQPSVGGPLSQSGLMTQVPVQGLSQTFRDGFSIGGMSQDFLGDDFKSQGSHVAYNTANFS
TQASQSGYGVDYVTQGTQGGFPGSFLNQNSQAGYSHLGTGNDFISQGLFTQVGFNDPSQD
DTSQAHFSVGAPNPLQSQDMMNPLYSQSFTQYNTQPLSLQVPQQQQGQGSQNQKLHYNG
NT seq 3780 nt   +upstreamnt  +downstreamnt
atggctgcgcagacggttgtaaacaatctttacgagacggcatcacagcctgatacaggc
ggagacgcctataccttcctggaattcaatacgcagggtgacgactatgactatccggaa
ttccgagaattatcacagccgatcaggtcgtccgtgtggcctccaacgccggattctgtg
tcagattctgctgaccgtggtgtcgaccttcaagccgatggtggcgctgtttcttctgct
cctggaagtgtgttgaagggtagaggcggaagcagtagcggcagcggcagcaatcaggct
acggtggatgccatagcgtcaggaatgagtggtctgagcttcgaagagaccggtgaggat
gagaattacgagtatgggaagggtgattttacggagcatgcctgtcggtattgtggggtc
caaaatccggcttgtgttgttaggtgcaacgtgccgtcatgccggaagtggttctgtaat
tcgcgggggaacacttcaggttctcatatcgtcaatcatctggttagagcaaaacacaag
gaagtttgtcttcataaagacagtcctctgggagaaacaattcttgaatgctacaactgt
ggttgcagaaatgtgtttcttcttggatttatttctgcgaagacagagagtgttgttgtt
cttctttgtagagaaccttgtttgagtgtcaatgcattgaaggatatgaactgggacttg
agccagtggtgtcctcttattgatgataggtgtttcttgcagtggcttgtgaagatccca
tctgaacaggagcaattgagagcacgccaaattagtgctcaacagataaataaggtggaa
gagctttggaaaactaaccctgatgccactcttgaagatcttgagaaacctggagtggat
gacgaacctcaacctgtagccttgaaatatgaagatgcatatcagtatcaaaatgtattt
gcaccgcttgtcaaacttgaagctgattatgataaaatgatgaaggaatcacagagtaaa
gacaatgtaaccatacggtgggatattggtctcaacaagaaacgcattgcatactttgtc
ttcccaaaggaagataatgaattgcggctggtacctggtgatgagttgcggcttcgttat
tcaggtgatgcaactcatccagcatggcagtctgtggggcatgtgatcaagttgactgca
caagaagaggttgctcttgagctccgtgccagccagggtgtacctgttgatgtgaaccat
ggtttcagcgttgattttgtttggaaaagtacaagttttgatcggatgcagggtgcaatg
aaaacttttgcagtggatgaaacaagtgttagtgggtacatatatcatcacttgctaggt
catgaagttgaggctcaggtggttcgtaatacactacctcgtcgttttggtgcaccaggc
cttccagaacttaatgcatctcaggtttttgctgtaaagagtgtactacagaaaccaatt
agtttaatacaagggcctcctggcacaggaaaaactgttacttccgcagctattgtatac
cacatggctaaacaaggacaagggcaggtgttggtttgcgctccaagtaatgttgctgta
gatcaacttgctgaaaagatcagtgcaactgggttgaaggttgtcaggctttgtgctaaa
tcgagggaagctgtaagctctcctgttgagcatttaactttgcactatcaggtccaacat
cttgatacatctgaaaagagcgaacttcataagctgcagcaactcaaggatgaacaaggg
gagctatctagcagtgatgagaagaagtacaaagccttgaaaagggcaactgagagggaa
atatcccagagtgctgatgtcatctgttgtacatgtgttggagctggggatcctcgatta
gcaaattttagattccgccaggttcttattgatgagtctacccaggcaacagagcccgaa
tgtctcattcctttagtgcttggagtgaaacaggttgttcttgttggagaccattgtcaa
cttggtccagtcatcatgtgcaagaaggcagctcgtgcaggattagctcaatccctcttt
gagcgtcttgtgcttcttggtgtgaaaccatttagattgcaggtgcaataccgtatgcat
ccatccctttcagagtttccttctaacagcttctatgaaggtacacttcaaaatggagtg
accatcaatgaaaggcaatcgtcagggattgattttccttggcctgtgccaaatcgtccc
atgttcttttatgttcagatgggacaagaggagataagtgcaagtggaacttcatactta
aataggactgaggctgcaaatgttgaaaaaattgttactactttcttgaggagtggtgtt
gttcctagccagattggagttataacaccatatgaagggcagcgagcctatatagtgaac
tatatgtcaaggaatggtgctctcagacagcagctttacaaggaaattgaggttgctagt
gtggattcctttcagggaagagagaaagattatattattttgtcctgtgttaggagtaat
gagcatcagggcataggattccttaatgatccgcgcaggctcaatgttgctcttacacga
gctcgctatggtattgttatcttgggaaatcctaaagtcttgagcaaacagccattgtgg
aatagtttattgacccactacaaggaacatgagtgcctggtggaaggacctttaaataat
ttgaagcagagtatggtccagtttcaaaagccaaaaaagatctacaacgaccgcagactt
ttctttggtaatggcccaggggttgtgccaaatgataactttgggtccattggttcatct
agctcaaattctgataaaagaggcaaccgctctaaaggttcttatatgccatttggtgca
cccaatggaacccaaaagcctggtgtccatccagctggatttcctgttccccgaattcct
cttccaccatttcctggtggtccacattcacagccttatgcaattccaactcgtggggct
gttcatggaccaattggagctgttccacaggtccctcaagcaggtagcaggggttttggg
gctgggcgtggtaatgcgggtggtcctattggtggtcacctctcacatcagcaaggttcc
caacaaagcatcggtggtctggggtctactttcaattttccttctctggacaatccgaat
agccagccttcagttggtggtccattatctcaatctggacttatgacccaggtgccggtt
caaggactaagccagacattccgtgacgggttttctattggaggcatgtcacaggatttc
ttgggtgatgacttcaaaagccagggatcacatgtcgcatacaacaccgcaaacttctcc
acccaggcttctcaaagtggatatggtgttgattatgttacacaaggaacacaaggtggt
ttcccaggaagctttctaaaccagaattcacaggctggatactctcatttgggtactgga
aatgatttcatatctcagggtctatttacccaggttgggttcaatgacccttcacaagat
gatacctctcaggcacactttagtgtgggtgctcctaacccacttcaatcccaggacatg
atgaatcctctttactctcagtcttttacccagtacaacacacagccactaagcctgcag
gtgccacagcagcagcagggtcagggctcacagaatcagaagctccattacaatggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (30)   
   KEGG ORTHOLOGY (1)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (21)   
   Pfam (21)   
All databases (64)   

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