KEGG   Nonlabens sp. MB-3u-79: CW736_01530
Entry
CW736_01530       CDS       T05253                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
nob  Nonlabens sp. MB-3u-79
Pathway
nob03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nob00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CW736_01530
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nob03021]
    CW736_01530
   03019 Messenger RNA biogenesis [BR:nob03019]
    CW736_01530
Transcription machinery [BR:nob03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     CW736_01530
Messenger RNA biogenesis [BR:nob03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     CW736_01530
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_25 NACHT OB_RNB AAA_22 AAA
Other DBs
NCBI-ProteinID: AUC78169
UniProt: A0A2K8X5F0
Position
327360..329114
AA seq 584 aa
MFQIADLKSKKLPELQDIAKGLNVPKFKQLRKLDLVYKILDLQASNPEVVKNLDPEVTTP
VAITAPETSDNKTNIPPTSDVLKKEPQKREPKPSNEKAPRSESSGTDETSKDKNDRKPRE
PRPRKETNKPNPRRPRNEKNDTTDNKNESNESEDSKNGNRKDNRNDNNSDKNDSRTSSSS
RQKNPRSNSNTNQSNVPKGNKDTRNRYRDPDFEFDGIIESEGVLDMMPDGYGFLRSSDYN
YLASPDDIYVSQSQIRLFGLKTGDTVLGMVRPPKEGEKYFPLIKISQINGLDPKVIRDRV
AFEHLTPLFPDEKFNLADRRASISTRVMDLFAPIGKGQRGMIVAQPKTGKTMLLKDIANA
IAANNPEVYQLILLIDERPEEVTDMQRNVDGEVIASTFDKEAHDHVKVANIVLEKAKRMV
ECGHDVVILLDSITRLARAYNTVQPASGKVLSGGVDANALHKPKRFFGAARNIEGGGSLS
IIATALTETGSKMDEVIFEEFKGTGNMELQLDRNISNRRVFPAIDLTSSSTRRDDLLLDE
KTMKHMWILRKYLADMNPVEAMEFISQKMKKTRNNEEFLATMNE
NT seq 1755 nt   +upstreamnt  +downstreamnt
atgtttcaaatagctgatttaaaatctaaaaaacttcctgaattacaggatatcgcaaaa
ggactaaatgttccgaaattcaaacaactgcgaaaactagatctagtttacaaaattctt
gacttacaagcttccaacccagaagtagttaaaaacttagatcctgaagtcaccactcca
gtagcaatcactgctcctgaaacttcagataacaaaaccaacattcctcctactagcgat
gttcttaaaaaagaaccgcaaaaaagagaaccaaaacctagcaacgagaaagctcctaga
agtgaaagctctggaacagacgagacgagcaaggataaaaatgacagaaaacctcgcgaa
cctagaccgaggaaagaaacaaacaagccgaatccgcgtagacctcgtaacgagaaaaac
gatacaactgacaataagaacgagagtaacgagtcagaggatagtaaaaatggtaaccgc
aaggataatcgcaacgataataacagcgataaaaatgacagccgtacgagcagcagcagc
cgtcaaaaaaatccgcgaagtaatagcaataccaaccagagtaacgtgccaaaaggtaat
aaggacactcgcaatcgttaccgtgacccagattttgaatttgacggtattatagaaagt
gaaggtgttctagacatgatgccagacggttatggattcctacgcagtagtgactataat
tacctagctagtcctgatgacatttatgtatcccaatcacaaatcagactttttggatta
aaaactggagatacggttttaggaatggtacgcccacctaaagaaggagaaaaatacttt
cctttaattaaaatatcacaaatcaatggacttgatcctaaggtaataagagaccgtgtc
gcttttgaacacttgacacctctttttccagatgagaagtttaaccttgccgacagacgc
gctagtatttctactcgtgttatggatctttttgctcctataggtaaaggacaacgaggt
atgattgtcgcacaacctaaaacaggtaaaacaatgttgctcaaggatattgcaaatgct
atcgctgcaaataatcctgaagtgtaccaattaatccttttgatcgatgagcgtcctgaa
gaggtaactgacatgcaacgtaacgttgatggagaagtaattgcctctacatttgataaa
gaagcacacgaccatgtaaaagtggctaacattgttcttgaaaaagcaaaacgtatggta
gaatgtggtcacgatgtagtgatcttactagattctattacaagacttgcgcgtgcctac
aacacggtacaacccgcaagtggtaaagttctatctggtggtgtagatgcaaatgcatta
cacaaacctaagcgcttctttggagcggctcgtaacattgaaggtggtggatcactatct
atcattgcaacagcactaacagagacaggctctaaaatggacgaggtcatctttgaagaa
ttcaaaggaaccggtaacatggaattacaactggatagaaacatatctaaccgtcgggta
ttccctgccatcgaccttacctcatcttccacacgtcgcgatgacttattgctcgatgaa
aaaacgatgaaacacatgtggattttacgcaagtatctcgctgatatgaatccagtagaa
gctatggagtttatctcacaaaaaatgaagaaaactcgtaataacgaggagttccttgct
actatgaatgaatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

Download RDF
DBGET integrated database retrieval system