KEGG T00281: Noc

Nitrosococcus oceani: Noc_0995

Entry

Noc_0995 CDS T00281

Definition

helicase RecD/TraA (EC:3.1.11.5)

Orthology

K03581

exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]

Organism

noc Nitrosococcus oceani

Pathway

noc03440

Homologous recombination

Class

Genetic Information Processing; Replication and repair; Homologous recombination [PATH:noc03440]

SSDB

Motif

Pfam:

AAA_30 HHH_4 UvrD_C_2 AAA_19 Viral_helicase1 HHH_5 AAA_11 HHH_2 Helicase_RecD AAA_22 PhoH NTPase_1 PIF1 T2SE DUF258 AAA AAA_28 AAA_14 AAA_17 DUF2075 AAA_16 AAA_18 ABC_tran UvrD-helicase cobW RNA_helicase UvrD_C NB-ARC

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(1101776..1103959)

AA seq 727 aa
MNAFHPEASPEFLAGTIERVTFHSEETGFCVLRIKVRGEHNLVTVVGNTATVTPGEYVEC
RGEWINDRTHGLQFKAKHLKVIPPSTLEGIEKYLGSGMVRGIGPHFAKKLVQAFGEQVFE
VIEHTAERLTELDGIGPKRKARVIQSWAEQKAVRAIMVFLQSQGVGSARAVRIYKTYGDH
AIERVRENPYRLALDIHGIGFKTADRIAQRLGIPADSLIRAQAGVRHVLQEFTTEGHCAM
EQDKLVETASKLLEIPVPTIEQAIAQEVTAGQLIAEVIHDKSCLFLTPLYRSETGVAKHL
QRLLQGRPPWGEINTDKAIPWAEEKTGLRLSPSQRAAVTQAVGSKIIVISGGPGVGKTTV
VNSIIRIVQVKQIQIHLGAPTGRAAKRLAESTGFEAKTIHRLLEFNPHAIGFKHHRGNPL
HTDLVIIDEVSMVDVGLMNQLLQAIPSHAACILIGDRDQLPSVGPGQVLADIIASKKITA
VHLTEVFRQAARSKIVVNAHRINQGKMPERTHEAAPLSDFYFIPTESPETIQDRLLELVS
TRIPKRFGFDPIRDIQVLTPMNRGSLGAQALNALLQQQLNAQASPKINRFGWTFALGDKI
IQTVNNYDKEVFNGDIGKITRIDIEESLVYISIDDREVEYELGELDEIALAYAISVHKSQ
GSEYPAVVIPLATQHYTMLQKNLLYTGVTRGKKLVVIVGQPKALAIAVKRTHVTSRLTHL
SARLANG

NT seq 2184 nt +upstreamnt +downstreamnt
atgaacgctttccacccagaagcctcgcctgagttcctcgccggcaccatagaacgggtt
acttttcatagcgaggaaaccggattctgcgtcctgcgaatcaaagtacgtggtgaacac
aatctcgtcaccgtagttggcaataccgctacggtcacgccgggggaatatgtggaatgt
cgcggtgagtggattaacgaccgcacccatggacttcagttcaaagcaaaacatctgaaa
gtcatcccccccagcaccctcgaagggattgaaaaatatctcggctcgggcatggtcagg
ggaatcggcccccacttcgccaagaaactggtgcaagccttcggtgagcaggttttcgaa
gttatcgaacatacagccgagcgcctcaccgaattagacggtatcggccccaagcgcaaa
gcgcgagtcatccagtcctgggcagaacaaaaagcggttcgcgctatcatggtgtttctg
caatcccagggcgtaggcagcgccagggcggttcgtatttataagacctatggcgatcac
gctatcgaacgggttcgcgaaaatccttaccggctggctctagatatccatggcatcggc
tttaaaaccgccgataggattgcccaacgactaggaatccccgccgattctctcatccgc
gcccaggcgggagtccgtcatgtactccaggaatttacgaccgaaggacactgcgcgatg
gagcaggacaagttagtggaaacagctagtaaattactggaaatccctgttcctactatc
gaacaagccattgctcaagaagtcaccgcagggcaactcatcgccgaagttattcatgac
aaatcctgcctctttcttactcccctttatcgctctgaaacgggggtcgccaaacatttg
caacgcctccttcagggtcgtcccccttggggagaaatcaatacggataaggcaatcccc
tgggcggaagagaaaacgggattgcgcctttctccctctcagcgcgcagcggttacacaa
gcagtcggcagcaaaatcattgtcattagcgggggaccgggggtcggtaaaaccactgtc
gtcaatagcattatccgaattgttcaggtcaagcaaatccagatacaccttggggcaccc
accgggcgggcagcaaaacggcttgccgaatcgaccggttttgaagccaaaacaatccac
cgtctgcttgaatttaatcctcatgccataggtttcaagcatcataggggtaaccccctc
catacggatcttgtcattattgatgaagtttccatggtcgacgtgggattgatgaatcag
ctactccaagccatccccagtcatgcggcgtgcatattgataggcgatagagatcagcta
ccttcggtagggccagggcaggtgctagcggatattattgcttccaaaaaaatcaccgct
gtccacctcaccgaggtttttcgccaagcagccagatccaaaatcgttgtcaatgcccat
cgaatcaatcaaggaaaaatgcccgagagaacccatgaagcagccccgctcagcgatttc
tattttattcccaccgagtctcccgaaaccatccaggataggctcctagaattagtaagc
acgcggattcctaaacgcttcggctttgaccccattcgcgatattcaagttcttaccccc
atgaaccgcggcagccttggagcacaggcgcttaatgcgcttctgcaacagcaactcaat
gcccaagccagccccaagatcaaccggttcggttggacctttgccctgggcgataagatc
attcagaccgtcaataattatgataaagaagtcttcaatggagatatcggcaaaataaca
agaatagatattgaggaaagtctcgtgtatatcagcatcgatgaccgagaggtagaatac
gagttaggcgagcttgacgaaattgctttggcctacgctatctcggtgcacaaaagccag
ggttccgaataccccgcagtcgtcattcccctagccacccagcactataccatgctacag
aaaaatctgctctacactggcgttacccggggcaaaaaactggttgtcattgtgggacag
cctaaagcgcttgccattgccgtcaaaaggactcatgtaacctcccgcctgacccacctt
tcagcgcggttagcaaacggttaa

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-NOC (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (28)   
   Pfam (28)   
All databases (38)   

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