KEGG   Novosphingobium pentaromativorans: JI59_18880
Entry
JI59_18880        CDS       T03399                                 
Name
(GenBank) DNA polymerase III subunit gamma/tau
  KO
K02343  DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
Organism
npn  Novosphingobium pentaromativorans
Pathway
npn03030  DNA replication
npn03430  Mismatch repair
npn03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:npn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    JI59_18880
   03430 Mismatch repair
    JI59_18880
   03440 Homologous recombination
    JI59_18880
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:npn03032]
    JI59_18880
   03400 DNA repair and recombination proteins [BR:npn03400]
    JI59_18880
Enzymes [BR:npn01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     JI59_18880
DNA replication proteins [BR:npn03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     JI59_18880
DNA repair and recombination proteins [BR:npn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     JI59_18880
SSDB
Motif
Pfam: DNA_pol3_gamma3 DNA_pol3_delta2 DUF3646 AAA RuvB_N AAA_5 AAA_22 AAA_16 AAA_30 AAA_24 AAA_assoc_2 TIP49 AAA_19 AAA_14 Glyco_tranf_2_5 DUF815 PIF1 T2SSE AAA_18 AAA_2
Other DBs
NCBI-ProteinID: AIT81677
Position
3854814..3856781
AA seq 655 aa
MDDSRDMFGDAPPWQDEEEEETPASAAELEAAGQASMFGDPEPAPPTAPPATDAADPGPQ
AESPALFEAVAEPEAAPELAPAPEPAAPEPKAEAPIAAPKPASANPPAGTSAQPYRVLAR
KYRPQTFDELIGQEAMVQTLANAIKRDRLAHAFLMTGVRGVGKTSTARLIAKALNCIGPD
GQGGPTINPCGRCEPCVAIAEGRHIDVIEMDAASHTGVDDVREIIEAVRYAAVSARYKIY
IIDEVHMLSRNAFNALLKTLEEPPAHVKFLFATTEVDKLPVTVLSRCQRFDLRRIPTPML
AEHFANVCGKEGVEAEEEALSMVAAAAEGSVRDGLSILDQAIAHADLDGEGQVRAEKVRD
MLGLSDKSVQRKLLSAILDGDGAALLELIARQFSLGIEPIAMMRGLMDLTHRVAVAQVAG
EVVDAHAAEEREAIEGWAKALKAGQVHRLWQLMLKGHDEVKSAPDPLVAAQMALLRIMHA
SDMPDPGALVRKLEEIAARAPAAAPAGEGGPSAGGPAAHATAPAAIAPRWEALVDDVEHM
GELSVANTMRMQVRVVELGAGLLRYSQPPGFSEDIAGLMRGALSKATGERWQVEKVDGQG
APTIVEIAETQQAAEGEAVRNAPLVAATMAAFPGAELIQDDRPAAIGGGGRQWRR
NT seq 1968 nt   +upstreamnt  +downstreamnt
atggacgattcacgcgacatgttcggcgatgcgcccccctggcaggatgaggaagaggag
gagactcccgcctcggcagccgagttggaagcggccgggcaagcctccatgttcggtgat
cccgaaccggcaccgcccacagcgccgccagcgaccgacgctgcagacccgggcccccaa
gccgaatcgccggcgttgttcgaggcggttgcggaacccgaagctgcaccagaacttgcg
cctgcaccggaacccgccgcccccgagccgaaagctgaagcacccatagcggctcccaag
ccagcttcggcgaaccctcctgccgggacttcggcccagccctatcgcgtgctcgcccgc
aagtaccgtccgcagactttcgacgaactgatcgggcaggaggcgatggtgcagaccctc
gccaatgcgatcaagcgcgaccggctggcccatgccttcctgatgaccggcgtgcgcggt
gtcggcaagacgtcgaccgcgcgcctcatcgccaaggcgctgaactgcataggtcccgac
gggcagggcggcccgacgatcaatccttgcggccggtgcgaaccgtgcgttgccattgcc
gaagggcgccatatcgacgtgatcgagatggacgcggcttcgcataccggcgtcgacgac
gtgcgcgagatcatcgaggcagtgcgctacgccgccgtttccgcgcgctacaagatctac
atcatcgacgaagtccacatgttgtcgcgcaatgcattcaatgccttgctcaagacgctt
gaggagccgccggcccacgtgaagttcctcttcgcgaccaccgaagtggacaagctgccg
gtcacggttctctcgcgctgccagcggttcgacttgcggcgcatcccgacgccgatgctt
gcagagcatttcgccaatgtctgcggcaaggaaggcgtggaggccgaggaggaagcgctc
tcgatggtggccgcggccgccgaagggtcggtgcgcgacggcttgtccattctcgaccag
gccatcgcccatgccgatctcgacggcgaggggcaggtgcgggccgagaaagtccgcgac
atgctgggcctttccgacaagtcggttcagcgcaagttgctgagcgcgatcctcgacggt
gacggcgcggccctcctggaactgatcgcgaggcaattctcgctcgggatcgagccgatt
gcgatgatgcgcggcctcatggacctcacgcatcgcgtcgccgtcgcgcaagtggccggc
gaagtggtcgatgcgcatgcggcggaggaacgagaagcgatcgagggctgggccaaggcg
ctcaaggccggacaggttcatcgcctctggcagctcatgctcaaggggcatgacgaagtg
aagtccgcccccgatccgctggtggctgcgcagatggcgctgctgcggatcatgcatgct
tctgatatgcccgatccgggcgcgctggtgcgcaagctggaagagatcgcggcgcgggcg
cccgcggcggcgcctgctggtgaaggcggaccgagcgcaggcggaccggccgcgcatgca
acggctcctgccgccatcgcgccgcgctgggaagcgttggtcgacgatgtcgagcacatg
ggcgagctctcggttgcaaacaccatgcgcatgcaggtccgcgttgtcgaactgggtgca
gggctcctgcgctattcgcagccgcccggcttcagcgaggacatcgccggtctcatgcgc
ggcgcactctcgaaggcgaccggcgagcgctggcaggtcgagaaagtggatgggcagggc
gcgccgacgatcgtcgagatagccgagacgcagcaggcagccgaaggcgaggccgtgcgc
aatgcgccgctcgtggccgctacgatggcagcctttcccggagccgaattgatacaggat
gaccgcccggccgcaattggcggcggcggtcgacagtggagacgttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (20)   
   Pfam (20)   
All databases (32)   

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