KEGG   Novosphingobium sp. PP1Y: PP1Y_AT4091
Entry
PP1Y_AT4091       CDS       T01515                                 
Name
(GenBank) chaperonin GroEL
  KO
K04077  chaperonin GroEL [EC:5.6.1.7]
Organism
npp  Novosphingobium sp. PP1Y
Pathway
npp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:npp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PP1Y_AT4091
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:npp03019]
    PP1Y_AT4091
   03110 Chaperones and folding catalysts [BR:npp03110]
    PP1Y_AT4091
   03029 Mitochondrial biogenesis [BR:npp03029]
    PP1Y_AT4091
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:npp04147]
    PP1Y_AT4091
Enzymes [BR:npp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.1  Enzymes altering polypeptide conformation or assembly
    5.6.1.7  chaperonin ATPase
     PP1Y_AT4091
Messenger RNA biogenesis [BR:npp03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     PP1Y_AT4091
Chaperones and folding catalysts [BR:npp03110]
 Heat shock proteins
  HSP60 / Chaperonin
   PP1Y_AT4091
Mitochondrial biogenesis [BR:npp03029]
 Mitochondrial protein import machinery
  Matrix
   Other matrix factors
    PP1Y_AT4091
Exosome [BR:npp04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   PP1Y_AT4091
  Exosomal proteins of other body fluids (saliva and urine)
   PP1Y_AT4091
  Exosomal proteins of breast cancer cells
   PP1Y_AT4091
  Exosomal proteins of colorectal cancer cells
   PP1Y_AT4091
  Exosomal proteins of bladder cancer cells
   PP1Y_AT4091
SSDB
Motif
Pfam: Cpn60_TCP1
Other DBs
NCBI-ProteinID: CCA91364
UniProt: F6IHB3
Position
423394..425043
AA seq 549 aa
MAAKDVKFSRDARERILAGVDTLANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEI
ELKDKFENMGAQMIREVASKANDAAGDGTTTATVLAQAIVREGMKSVAAGMNPMDLKRGI
DLAVTKVVENLKSRSKDVSGNAEIAQVGVISANGDREVGEKIAEAMEKVGKEGVITVEEA
KGLEFELDVVEGMQFDRGYLSPYFVTNPDKMTVELDNPYILIHEKKLSNLQAMLPILEAV
VQSGRPLLIIAEDIEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLGDIATLTAGEM
ISEDLGIKLENVTLNMLGEAKKVTIDKDNTTIVDGSGSAEEIKARVEQIRAQIEVTTSDY
DREKLQERLAKLAGGVAVIKVGGASEVEVKERKDRVDDALHATRAAVEEGIVPGGGTALL
YATKALEGLKGENDDQTRGVDIIRQSIMAPVRQIASNAGFDGAVVSGNLLRENDETQGFN
AATDTYENLVAAGVIDPTKVVRTALQDAASVAGLLITTEAAISEAKEDKPAMPMPDMGGM
GGMGGMGGF
NT seq 1650 nt   +upstreamnt  +downstreamnt
atggcagccaaggacgtaaagttctcgcgcgacgcccgcgagcgcattctcgccggtgtc
gacaccctcgccaatgccgtcaaggtgaccctggggcccaagggccgcaacgtcgtcatc
gagaagagcttcggcgctccgcgcatcaccaaggacggcgtcaccgtcgccaaggaaatc
gaactcaaggacaagttcgagaacatgggcgcgcagatgatccgcgaagtggcctcgaag
gccaacgacgcggccggtgacggcaccaccaccgccaccgttcttgcccaggcgatcgtt
cgcgaaggcatgaagtcggttgctgccggcatgaacccgatggacctcaagcgcggtatc
gacctcgccgtgaccaaggtcgtcgagaacctcaagagccgttcgaaggacgtctcgggc
aacgcggaaatcgcccaggtcggcgtgatctcggccaatggcgaccgtgaagtcggcgag
aagatcgccgaagccatggaaaaggtcggcaaggaaggcgtgatcaccgtggaagaggcc
aagggcctcgaattcgaactcgatgtcgtcgaaggcatgcagttcgaccgcggctacctg
tcgccctacttcgtcaccaacccggacaagatgactgtcgaactcgacaatccctacatc
ctgatccacgaaaagaagctgtcgaacctgcaggcgatgcttccgatcctcgaagccgtt
gttcagtcgggccgtcccctgctgatcatcgcagaggacatcgaaggcgaagccctggcc
actctggtggtcaacaagctgcgcggcggcctcaaggttgctgccgtcaaggctccgggc
ttcggcgatcgccgcaaggccatgctgggcgacatcgccacgctgaccgccggtgagatg
atctcggaagacctcggcatcaagctcgagaacgtgacgctcaacatgctgggcgaagcc
aagaaggtcacgatcgacaaggacaacacgaccatcgtcgatggttcgggttcggccgaa
gagatcaaggcccgcgtcgagcagatccgtgcgcagatcgaagtcaccacttcggactac
gaccgcgagaagctgcaggagcgtcttgccaagctggctggcggcgttgccgtgatcaag
gtgggcggcgcttcggaagtcgaagtgaaggagcgcaaggaccgcgtcgacgacgctctc
cacgctacccgcgctgccgttgaagaaggcatcgtccccggtggcggtaccgcgctgctc
tacgccaccaaggctctcgaaggcctcaagggcgagaacgacgaccagacccgcggcgtg
gacatcatccgccagtcgatcatggctccggttcgtcagatcgcgagcaacgccggcttc
gacggtgcggtcgtctcgggcaacctgctgcgtgaaaacgacgagacccagggcttcaac
gcggctaccgacacctacgagaacctcgtggctgccggcgtcatcgacccgaccaaggtc
gttcgcactgccctgcaggacgcggcttcggtcgccggcctgctgatcaccaccgaagcg
gcgatcagcgaagccaaggaagacaagcccgccatgccgatgcccgacatgggcggcatg
ggcggcatgggtggcatgggcggcttctaa

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Ontology (6)   
   KEGG BRITE (6)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (14)   

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