KEGG   Nanorana parkeri (Xizang Plateau frog): 108797183
Entry
108797183         CDS       T04897                                 
Symbol
THOC1
Name
(RefSeq) THO complex subunit 1
  KO
K12878  THO complex subunit 1
Organism
npr  Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03013  Nucleocytoplasmic transport
npr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:npr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108797183 (THOC1)
  09122 Translation
   03013 Nucleocytoplasmic transport
    108797183 (THOC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:npr03019]
    108797183 (THOC1)
   03041 Spliceosome [BR:npr03041]
    108797183 (THOC1)
Messenger RNA biogenesis [BR:npr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     108797183 (THOC1)
Spliceosome [BR:npr03041]
 Complex C
  Other components
   EJC/TREX
    108797183 (THOC1)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    108797183 (THOC1)
SSDB
Motif
Pfam: efThoc1 Death
Other DBs
NCBI-GeneID: 108797183
NCBI-ProteinID: XP_018424259
Position
Unknown
AA seq 657 aa
MSPPLFSLQEARSKFTNATREALVSKNIKNVLTAFSQAAGSENEKKPTLDQVFRVVLEEE
IINQASCENCLAIISLAISGVTEGICTATTPFVLLGDVLDCLPLDHCDRIFTFVEKNVGT
WKSNSFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPISEKSGLNLQSQFN
LENVTIFNVNEGESTLGQKQVEDREDGMEIEEGEMGDDEAPNSSSIPIDYNLYRKFWSLQ
DCFRNPIQCYDKSSWKIFLKYSEEVLAVFKSYKLDDTQASRKKIEELKSGGEHVYFAKFL
TSEKLMDLQLSDSNFRRHILVQYLILFQYLKGQVKFKSSNYVLLDEQSLWIEDTTKLVHQ
LLCETPCDGEKFSKMVEHILNTEENWNSWKNEGCPSFVKERQQDGKPGKVARKRAAPEDF
LGKGSNKKILMGNDELTRLWNLCPDNIDACKAESREFMPTLEQFFEEAIEQADPENMVEN
AYKVVNNSNYGWRALRLLARRSPHFFQPTNQQFRSLPEYLENMVIKLAKELPPPSEEIKT
GEDEEDDEDNESLLKENNESPEVQQQKLISGELIESLANKLGEHWKTLAPHLEIKEADIK
VIESDSEDVKMRAKLLLIAWQDREGAHATTENLITALNHAHLSDLAESLANDTENGT
NT seq 1974 nt   +upstreamnt  +downstreamnt
atgtctccgccgttgttcagcctgcaggaggcgagaagtaaatttacgaatgccaccaga
gaagctttggttagcaagaacatcaagaatgtgttgactgcatttagccaggcggctgga
agtgaaaatgagaaaaagccgacacttgaccaagttttcagagttgttttggaggaggaa
attattaatcaagcatcttgtgaaaactgtcttgcaattatttcacttgccatcagtgga
gttacagaaggcatttgtacagctaccacgccgtttgtgctcctgggggatgtccttgac
tgtcttcctctggatcactgcgatcgaatcttcacatttgtcgagaaaaatgttggcaca
tggaaatctaattcgttttattcagctggcaaaaactacttgctaaggatgtgtaatgat
cttttgaggagactttccaagtcacagaacacagtgttttgtgggaggattcagctgttt
cttgcccgcttatttccaatttcagaaaagtctggtttgaatttgcagagtcagtttaac
ttggagaatgtcaccattttcaatgtcaatgagggtgagagcactctgggacagaaacaa
gtggaggatagggaagatggaatggagattgaggaaggtgaaatgggagatgatgaagca
cctaacagttcatcaattcctatagattacaacctatataggaagttctggtctctgcag
gactgcttcaggaacccaatacagtgctatgacaagagctcctggaagatatttcttaag
tactcggaagaggttcttgcagtatttaagagttacaaactggatgacacccaggcatca
cggaaaaaaatcgaggagctaaaatcaggaggagaacacgtgtattttgccaagttcctg
acaagtgaaaagttaatggatttacaattgagtgacagtaacttccgacgacatatcttg
gtgcagtaccttatattgttccagtacttaaaaggccaagtcaagtttaagagttctaat
tacgtgctgctggatgagcaatctctttggattgaagacaccaccaaacttgttcatcag
ttactgtgtgagacaccctgtgatggagagaagttttcaaagatggtggagcacatcctt
aacacagaagaaaactggaattcatggaagaatgaaggctgcccaagttttgtgaaagaa
aggcaacaagacggcaaaccagggaaagtggcaaggaaacgtgcagcccctgaggacttt
ctgggaaaaggttcaaataaaaagatcttaatgggaaatgatgaattaacacggctgtgg
aatctttgcccagacaacatagacgcatgcaaggccgagagcagagagtttatgccaaca
ttggaacagttttttgaagaggccattgaacaagcggatcccgaaaacatggttgaaaat
gcgtacaaggttgtgaacaattcaaattacggctggagagcgctgagactattggctcgt
agaagtcctcactttttccaacctaccaaccaacagtttaggagtttaccagaatacctg
gagaatatggtgataaagttagccaaggaattgccacccccatcagaggaaataaaaacg
ggagaggatgaagaggatgacgaagacaatgaatctttattaaaggaaaataatgaaagt
ccagaagtccagcaacagaagctaatctctggtgagctgattgaatctcttgccaacaag
cttggagagcactggaaaacactggcccctcatttagaaataaaagaggcggacattaag
gttattgaatcggacagtgaagatgtaaaaatgagagctaaattgttactcatcgcttgg
caggatcgagagggagctcatgccaccactgaaaaccttattactgctttgaatcatgct
catttaagcgatctggcggaaagcttagccaacgatacagaaaatggcacataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (27)   

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