KEGG T04875: BST91

Nonlabens tegetincola: BST91_03130

Entry

BST91_03130       CDS       T04875

Name

(GenBank) RNA helicase

K05592

ATP-dependent RNA helicase DeaD [EC:5.6.2.7]

Organism

nsd Nonlabens tegetincola

Pathway

nsd03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:nsd00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BST91_03130
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nsd03019]
    BST91_03130
   03009 Ribosome biogenesis [BR:nsd03009]
    BST91_03130
Enzymes [BR:nsd01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     BST91_03130
Messenger RNA biogenesis [BR:nsd03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     BST91_03130
Ribosome biogenesis [BR:nsd03009]
Prokaryotic type
  rRNA helicases
   BST91_03130

SSDB

Motif

Pfam:

DEAD Helicase_C DbpA ResIII Helicase_RecD DUF5679 AAA_19 Tht1 MtrA AAA_22

Other DBs

NCBI-ProteinID:

ARN70709

Position

624284..626155

AA seq 623 aa
MKNFEALGLSQPLLDGLAEMGFENPTEIQQQAIPILLQHDGDFIGLAQTGTGKTAAFGIP
LLELMDTSSDDTQALILAPTRELAQQICKQLDLMSSKLGKLKIVPVFGGANIMGQIKDLR
RGAQVIVATPGRLMDLMKRKEVRLDSLRFMVLDEADEMLNMGFKEDIDYILSKSDMGRNI
WLFSATMAREIKQIVNTYMNNPQEVKVNRENIVNTNISHEYVQLKASDKIEGLRRMLDYD
QDMFGVVFCRTKRDTQNVADQLNNNGYSTEALHGDMSQHQRDAAMKRFRDKNINLLIATD
VAARGIDVDDITHVIHLALPDDPEFYTHRSGRTARAGKKGVSMAFVTKGDTRKLKFLERK
LGINFEKGEIPKIEDIADKRINRWTEQLIVQDLHKKLNVETVDGVMAALEGITKEQLVMK
FLSREFESIYKRSSITDVNDRSKGRDRDSGKDRGYKTNGKEEGMKTFFLNLGRKDDVNKG
AILGFICDVTGIKGKEVGRILVEGAHSFIDVSEEVAPLMKVLDGAQRDGRELRCNEHKGE
VRRSRDRGRRGGRDRNRGRGGKKRENDNGSFKGRSKRSDFDKSGSRPNKDDKVVEFPSKR
KGNSSKGKSKKKGRSNFFGSKWD

NT seq 1872 nt +upstreamnt +downstreamnt
ttgaaaaattttgaagccttagggctatcacagccgttactagacggccttgctgaaatg
gggtttgagaatccaacagagattcaacagcaagcgattcccatcttgttacaacatgat
ggagattttataggtctggcgcagaccggtacagggaaaacagcagcttttggtattcca
ttactagagctcatggacacatcgtcagacgatacacaggcgcttattctagcacctact
cgtgaactagcacaacaaatttgtaagcagttagacttaatgtcttccaaattgggtaag
ttgaaaattgtacccgtttttggaggagctaatataatgggtcaaatcaaggatttgaga
agaggagcgcaagtaattgttgctactccaggtcgtttgatggacttaatgaaacgtaag
gaagtacgcctagattccttaagattcatggtgcttgatgaagccgatgaaatgcttaac
atgggattcaaggaagatatcgattacatcctttctaagagtgatatgggtagaaatatt
tggttgttcagtgctactatggcacgtgagatcaagcaaatcgttaatacctacatgaac
aatccacaggaagttaaggttaatcgtgagaatattgtaaatacaaatatttctcatgaa
tacgtacaacttaaagcaagtgacaagattgaaggattgcgtcgtatgttagattatgat
caggatatgtttggtgtagtgttttgtagaacaaaacgcgatacgcaaaatgtagccgat
caattaaataataacggttactcaaccgaagctttacacggtgatatgtcgcaacatcaa
cgagatgcagcgatgaagcgctttagagataaaaatataaaccttcttattgctaccgat
gttgctgcaagaggtattgatgttgatgatattactcatgtaattcaccttgctctacca
gacgatccagaattttacacacaccgatctggtcgtactgcacgtgctggtaaaaagggt
gtttctatggcatttgttaccaaaggagatactcgtaaacttaaatttctagaacgtaaa
ttgggaataaactttgaaaagggtgaaattcctaagattgaagacatagccgataagcgt
attaatcgttggacagaacagcttattgttcaagatctacacaagaaactgaatgttgaa
acagtagatggcgttatggcagcacttgaaggtattaccaaagaacaattggtaatgaaa
ttcttgagtcgtgaatttgaaagtatttacaagcgctcttctattactgatgtaaatgat
cgcagcaagggacgtgatagagattctggtaaggatagaggttataaaactaatggtaaa
gaagaagggatgaaaacattcttcttaaacctaggtcgtaaagacgacgttaataaaggt
gctattcttggttttatttgtgatgttactggaataaaaggaaaagaagttggaagaatt
ctagttgaaggtgcacattcgtttattgacgtaagtgaagaagttgctccacttatgaaa
gttctagatggagcacaacgcgatggacgtgaattacgatgcaatgaacacaaaggtgag
gtaagaagatctagagatagaggtcggagaggtggtcgtgatagaaatcgaggtcgcggt
ggaaagaagcgtgaaaacgataatggttcttttaaaggacgttcaaagagatcagacttt
gataagtcaggatctagacccaataaagatgataaggtagttgaattcccaagtaaaaga
aaagggaatagtagtaaaggaaaatcaaagaaaaaggggcgatcaaatttctttggatct
aagtgggattaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (19)   

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