KEGG   Nicotiana sylvestris (wood tobacco): 104224708
Entry
104224708         CDS       T05026                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase
  KO
K12820  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6]
Organism
nsy  Nicotiana sylvestris (wood tobacco)
Pathway
nsy03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nsy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104224708
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:nsy03041]
    104224708
   03009 Ribosome biogenesis [BR:nsy03009]
    104224708
Enzymes [BR:nsy01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     104224708
Spliceosome [BR:nsy03041]
 Complex A
  U2 snRNP components
   U2 related factors
    104224708
 Complex B
    104224708
 Complex C
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-SnRNP related factors
    104224708
Ribosome biogenesis [BR:nsy03009]
 Eukaryotic type
  90S particles
   Helicases
    104224708
SSDB
Motif
Pfam: OB_NTP_bind HA2_C HA2_N Helicase_C DEAD AAA_22 AAA_19 ABC_tran ResIII nSTAND3 SRP54 AAA_30 T2SSE Flavi_DEAD FtsK_SpoIIIE AAA_7 PhoH UvrD-helicase SLFN-g3_helicase AAA_29 TsaE NACHT
Other DBs
NCBI-GeneID: 104224708
NCBI-ProteinID: XP_009774703
UniProt: A0A1U7W7U4
Position
Unknown
AA seq 722 aa
MGTERKRKVSLFDVVDETPAKKVNVGSVNGSMTPSINKWNGKPYSQRFYEILEKRKTLPV
WHQKEEFLQALKSNQTLILVGETGSGKTTQIPQFVLDAVEVETADKRRKYMIGCTQPRRV
AAMSVSRRVAEEMDVAIGEEVGYSIRFEDCSSTKTVLKYLTDGMLLREAMADPLLERYKV
IILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLMKVPGRL
HPVEIFYTQEPERDYLEAAIRTVVQIHTCEPPGDILVFLTGEEEIEDACRKINKEVSNLG
DQVGPVKVVPLYSTLPPAMQQKIFDSAPPSVVEGGPAGRKIVVSTNIAETSLTIDGIVYV
IDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFHNDLQP
QTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLT
RLGEIMSEFPLDPQMAKMLVVSSEFNCSNEILSISAMLSVPNCFVRPREAQKAADEAKNR
FGHIDGDHLTLLNVYHAYKQNTEDPQWCYENFINQRALKSADNVRQQLSRIMARFNLKLC
STDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIY
NEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLANFPQCEAKRVLERLYKKREREKDESKI
KR
NT seq 2169 nt   +upstreamnt  +downstreamnt
atgggaacggagcggaagaggaaagtaagcttgtttgatgtggtggatgagacgccagct
aagaaagtgaatgttggaagcgtaaacggtagcatgacgccgtcgattaataagtggaac
gggaagccttactcacagagattctatgagatattggagaaaaggaagactcttccggtt
tggcatcaaaaggaggagtttttacaggctttaaaatctaatcaaaccctaattttggtt
ggtgaaaccggtagtggtaaaaccactcagattccgcagtttgttttagatgctgttgaa
gttgagacggcggataagcgcaggaagtatatgattggttgcactcaacctcggagggtg
gctgcaatgtctgtgtctcgtcgagttgctgaggagatggatgttgcaattggggaagaa
gttggatatagcatccgttttgaagactgcagtagtactaaaactgttttaaaatactta
acagatggtatgcttttaagggaagcaatggcagatcctctattggaacgctacaaagta
attattctggatgaagcccatgaaagaactttggcaacagatgtcctgtttgggcttctt
aaggaggtgttgaaaaatagaccagacctaaagcttgttgttatgagtgccacacttgaa
gcagagaagtttcagggttacttctttggtgcgcccctcatgaaagtgcctggaaggctt
catcctgtggaaattttctacactcaggagcctgagagagattatctcgaggctgccatt
cggactgtggtgcagatacacacatgtgaacctcctggtgacatacttgttttccttact
ggagaagaggagattgaagatgcttgtcgcaaaatcaataaggaggttagtaatttgggt
gatcaagtgggccctgttaaagtggtgcctctttattctacacttcccccagctatgcag
caaaagatatttgattcagccccaccctcggtggtggagggtggtcctgctggcaggaag
attgttgtgtcaaccaacattgcagagacatctttgacaattgatggcattgtatatgtc
atagatccgggatttgctaaacaaaaagtttataaccctagggtgcgtgttgaatctttg
ttggtgtctcctatttcgaaggccagtgcccaccagagatcaggacgtgctggaagaacg
cagccagggaaatgctttagactttacacagagaaaagtttccataacgaccttcaacca
cagacctatccagaaatacttcggtcaaatttggctaatacagttctaactttgaagaag
ttaggtattgacgacctggttcattttgattttatggatcctcctgccccagagacgttg
atgagagcactggaggttttgaattacttgggagcattggatgatgaggggaacttgact
aggttgggtgagattatgagtgaatttcctcttgatcctcagatggcaaaaatgcttgtt
gtcagctcagaattcaactgctccaatgaaatcctctcaatatccgccatgctatcagta
cccaattgctttgtccggcctagggaggctcagaaagctgcagatgaagcaaagaatcgg
ttcggtcacatagatggggatcatttgacgttgctgaatgtgtatcatgcctacaagcag
aacacggaagatcctcaatggtgctacgagaatttcatcaatcagagggctctcaaatca
gccgacaatgtgaggcaacagctttctcgcataatggccaggttcaacctcaagttatgc
agcacagacttcaacagtcgcgactactacgtaaacataagaaaggctatgttagctgga
tatttcatgcaggttgctcacctagagcgtactgggcactatctgactgttaaagacaat
caagtggttcacttgcatccttcaaattgcctggatcataagccagaatgggttatctat
aatgaatatgtcttgacaagcaggaatttcatccgtactgtgactgatattcgtggtgaa
tggttggttgatatcgcaccacattactatgaccttgcgaactttccgcaatgtgaggca
aaacgagttcttgagcggttatacaagaagcgagagcgagaaaaagacgaaagcaaaatc
aaaagatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (22)   
   Pfam (22)   
All databases (35)   

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