KEGG   Nicotiana sylvestris (wood tobacco): 104249751
Entry
104249751         CDS       T05026                                 
Name
(RefSeq) serine/arginine-rich splicing factor SR45
  KO
K14325  RNA-binding protein with serine-rich domain 1
Organism
nsy  Nicotiana sylvestris (wood tobacco)
Pathway
nsy03013  Nucleocytoplasmic transport
nsy03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:nsy00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    104249751
   03015 mRNA surveillance pathway
    104249751
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nsy03019]
    104249751
Messenger RNA biogenesis [BR:nsy03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     104249751
SSDB
Motif
Pfam: RRM_1 RRM_occluded RRM_5 Nup35_RRM_2
Other DBs
NCBI-GeneID: 104249751
NCBI-ProteinID: XP_009804535
UniProt: A0A1U7Z0U7
Position
Unknown
AA seq 415 aa
MAKPGRGRAASPSGSSSRSPSRSRSRSYSSRSSSSRSPSRSRSRSRSFSSSSSSGSSRSP
SPRPPPSQRKSPAGVSKRGRSPPPLSKKASPPPRKVSPTPESRVLHVDQLSRNVNENHLK
EIFGNFGEILHVQLVIDHVVNLPKGFAYVEFKTRIDAEKAQLHMDGAQIDGKIVHAKFTL
PERKKAPSPPRAAATISRRDAPRTDNAPVDLEKDGPKRQQELSPRRKPLSPPRRSPIGRR
GSPRREPDSPARRRAESPIRRRAGSPYRRGSPPAPRRRPASPVRRRSPSSPPRRYRTPPR
GSPRRIRGSPVRRRSPLPPRRRSPPRRARSPPRRSPVGRRSSRSPIRRPIRSRSRSISPR
RGRAPAARRGRSSSYSSSPSPRKAPRKISRSRSPRKPLRGRSPSNSDSSSSPRKP
NT seq 1248 nt   +upstreamnt  +downstreamnt
atggcgaaaccaggccgaggccgtgcggcttcgccgtcaggctcgtcttctcgttctcca
tcgcggtctcgctctcgctcttactcttctcgctcctccagttcccgctctccctctcga
tctagatcccgctccagatcgttttcttcctcttcctcaagtggaagttctcgcagccct
agcccccgccctcctccttctcagcgaaaaagccctgctggagtatctaagcgaggccgt
tcaccaccaccactatctaagaaagcttctccacctccaaggaaagtctctccaactcct
gagtcacgtgtgcttcatgtggatcagctcagcaggaatgtcaatgaaaaccatctgaaa
gaaatatttggtaattttggtgaaattctgcacgtgcagttggtcattgatcatgttgtt
aaccttccaaaagggtttgcttatgttgagttcaagactagaattgatgctgagaaagcc
caactacacatggatggtgcacagattgatgggaaaatagttcatgccaagttcaccctg
ccagagcggaaaaaggctccctcaccaccaagggctgctgcaactatctcaagaagagat
gctccaagaactgataatgcccctgttgatttggagaaagatggaccaaaacggcaacaa
gagttatctcctcgtcgaaaacctctctctccacctcgaaggtctcctataggacgaaga
ggatctcctagacgtgagccagattctcctgcccgtcgacgtgctgagtctcctattcgt
cgtcgcgcaggttctccttataggcgcggcagtccaccagccccaaggaggaggcctgca
tctcctgttagacgacgttcaccatcctctccaccaagacgttatcgaacacctcctagg
ggctctcccagaagaattcgtggcagtcctgttcgaagacgttctccccttccgccaagg
cgacgttctccaccacgacgtgctagaagtccacccagaagatctccggttggtcgccgg
tctagccgctcacctattaggagacctatccgttcacgatcaagatccatctctcctagg
cggggaagggctccagccgcaagacgtgggaggtcatcatcctactcttcttctcccagt
cctcgaaaggcaccccgcaagatttcaaggagtcgtagtcctagaaagcctttaagaggg
aggagccccagcaacagtgacagcagcagttcgcctcgtaagccctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

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