KEGG   Nicotiana tabacum (common tobacco): 107778015
Entry
107778015         CDS       T04643                                 
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
  KO
K10601  E3 ubiquitin-protein ligase synoviolin [EC:2.3.2.27]
Organism
nta  Nicotiana tabacum (common tobacco)
Pathway
nta04120  Ubiquitin mediated proteolysis
nta04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:nta00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    107778015
   04120 Ubiquitin mediated proteolysis
    107778015
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:nta04121]
    107778015
Enzymes [BR:nta01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     107778015
Ubiquitin system [BR:nta04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    107778015
SSDB
Motif
Pfam: zf-RING_2 zf-C3HC4 zf-rbx1 zf-RING_UBOX zf-C3HC4_2 zf-C3HC4_3 FlxA zf-RING_11 zf-RING_16 zf-RING_5 zf-ANAPC11 zf-C3HC4_4 RskA Prok-RING_4
Other DBs
NCBI-GeneID: 107778015
NCBI-ProteinID: XP_016453676
UniProt: A0A1S3YN08
Position
Un
AA seq 484 aa
MMRLQTYAGLSVIATLAAIYHAFSSRGQFYPAMVYLSTSKISLVLLLNMALAIMCILWQL
TKKVFLGTLREAEAERLNEQSWRELMEILFAITIFRQDFSVMFLAMVTGLLFIKSLHWLA
QKRVEHIETTPAVTKLSHIRIVSFMGFLLLIDSIFLYNYMNHLIQTRHASVSLFFAFEYM
ILTTTTVATFVKYVFHVCDMLMEGQWERKAVYTFYLELIRDLLHLTMYMCFFLMIFINYG
VPLHLIRELYETFRNFKSRVADYIRYRKVTSNMNDLFPEATPEELNGGDTICIICREEMT
TAKKLVCGHLFHVNCLRSWLERQHTCPTCRALVVPPENGTNVAGSRYAQQGPGTSFTPQG
SQADPRTNSHVSQHQARLQAAAAAAAIYEKSIVYPSAQMLPCYLGANMPFGDSSWNNLST
SDTQLEAHRISLQQQIEILRSQLTLLQSSKTQRAAAAVGASDGKGKAISFESAQKGQAEG
QTGS
NT seq 1455 nt   +upstreamnt  +downstreamnt
atgatgagactacaaacttatgcggggcttagtgtaatagctacactagctgctatttat
catgccttcagcagtagaggccagttttacccagcaatggtttatttatcgacatctaag
atcagtctggtgcttctcctcaacatggctctcgccattatgtgcattttatggcaacta
accaagaaagttttccttggtactcttcgggaggcagaggcggagaggctaaatgaacaa
tcatggcgggaactcatggaaatactttttgcaattactattttccggcaagacttctct
gtgatgtttcttgccatggttaccggcctattgtttatcaagtctttgcattggttggct
cagaaacgggttgagcatattgaaacaactccagcggttactaagttgtcccacattcga
atagtctctttcatgggcttcctcctcctcattgatagtatctttttgtacaactacatg
aaccatttgatacagacaagacatgcttctgtttctctcttctttgcatttgagtacatg
atactcactacaacaactgttgcaacattcgtgaaatatgtattccatgtatgtgacatg
cttatggaaggacaatgggagaggaaggctgtatatactttctacttggagcttattcgg
gacttgctccacttgactatgtacatgtgcttcttcctcatgattttcatcaattatggt
gtgcctctgcacttgattcgggaactttatgagacattccgcaacttcaagagtcgagtt
gctgactacatacgctatcgaaaagtcacctcaaacatgaatgatctttttccagaggct
acaccggaagagctcaatggaggtgataccatctgtatcatttgtcgtgaggagatgacc
actgccaagaaacttgtttgtggacatctctttcatgttaattgcctccggtcatggcta
gaacgtcagcacacatgtcctacatgcagagcccttgttgtaccacctgaaaatgggacg
aatgttgcaggatctcgatatgctcagcaaggcccaggaacaagttttacacctcaaggt
tctcaagcagatcccaggacaaacagccatgttagccagcaccaggctagactccaagct
gcagcagcagctgctgcaatttatgagaagtccattgtttatccttctgcacagatgcta
ccctgctatcttggtgctaacatgccttttggagatagttcttggaacaaccttagtact
tcagatactcaactcgaggcccataggatatccttacagcagcagattgagattctgcga
agccagctcacgcttctacagagttcaaagacacagagagcagctgctgcggtaggagct
tcagatggcaagggaaaagcaatttcgtttgagagtgctcagaaaggacaggctgaaggt
cagacaggttcttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (14)   
   Pfam (14)   
All databases (34)   

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