KEGG   Nicotiana tabacum (common tobacco): 107780004
Entry
107780004         CDS       T04643                                 
Name
(RefSeq) polyadenylate-binding protein 3-like
  KO
K13126  polyadenylate-binding protein
Organism
nta  Nicotiana tabacum (common tobacco)
Pathway
nta03015  mRNA surveillance pathway
nta03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nta00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    107780004
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107780004
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nta03019]
    107780004
   03041 Spliceosome [BR:nta03041]
    107780004
Messenger RNA biogenesis [BR:nta03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     107780004
   mRNA cycle factors
    Stress granule specific factors
     107780004
Spliceosome [BR:nta03041]
 Complex C
  Other components
   Complex C specific factors
    107780004
SSDB
Motif
Pfam: RRM_1 PABP RRM_occluded RRM_5 MARF1_RRM1 RRM_7 SET_assoc DUF848
Other DBs
NCBI-GeneID: 107780004
NCBI-ProteinID: XP_016455998
UniProt: A0A1S3YV27
Position
Un
AA seq 657 aa
MAATAVPPPAVQTQAETTMVGPTPPPTPQVAIMGGGGNGSGGVGVTTSTNYALYVGDLDT
SVEEGQLYEVFNHVAQVVSIRVCRDQSGRSSLGYAYVNFTSPQDAATARELLNFTQLNGK
PMRIMFSHRDPSLRKSGYANVFIKNLDSSIDNKALYDTFAAFGTVLSCKVAADINGQSKG
YGFVQFDQDEAAHNAIKRLNGMLINDKQVYVGHFIRRQERSQANASDKFTNVYVKDLPET
TTDEDLKKLFEKYGTITSAVVMKDKNGKSKCFGFVNYESSDAAVSAVEQLNGSSLKEKVL
YVGKAQKKSEREAKLKAKFEQERASRFEKLKGANLYLKNLDSVSDENLKELFSEYGTITS
CKVMSDSKGVSKGSGFVAFSTPEEATRALNEMNGKLIGKKPLFVAVAQRKDERRASLQAH
FARMRPAGGMAPPPGAMSGFHNGAPRLAPQQVYFGQGAPGLIAPQAAEFGFQQQLMPGLR
PGVGPNFLLPYQLQRQGQHGRVGGRRGGNSQQQQQWNSGRFKPNGRNGMHPSITQGMMGP
IMPAPFDASAMTSSTLDIQRTNPVPPSTLASSLAFASPEDQHRMLGEQLFPLVERIERDH
AGKVTGMLLEMDQTEVLHLIESPDALNKKVSEAMDVLRLAGPGSSVGDKFGSLTLNG
NT seq 1974 nt   +upstreamnt  +downstreamnt
atggcggcgacggcggttccgccaccggcggtgcaaactcaggcggaaacgacgatggtc
ggaccgacgccaccgccgactccgcaggtggcaataatgggaggtggtggtaacggtagt
ggtggtgttggtgtgacgacgagtacgaactatgccctgtacgtaggggatctggacacg
tcagtggaagaaggacaactgtatgaggtgtttaaccatgtggcacaagtcgtgtccatt
agggtttgcagggatcaatcgggccggtcctccctcggttacgcttatgtcaatttcact
tctccacaagatgctgctactgctagggagttattgaattttactcagttgaatggaaaa
cctatgaggataatgttttctcatagagatcctagtctgcggaagagcggatatgcaaat
gttttcattaagaatctggactcgtcaattgataacaaggcattgtatgacacttttgct
gcctttggaacggttctttcctgcaaggtagctgctgatattaatggtcagtcaaaagga
tatggatttgtacaatttgatcaggacgaagctgcacacaatgcaatcaagcgtctgaat
ggtatgttgataaatgataaacaagtctatgttggccacttcatccgtcgacaagaaagg
agtcaagcaaatgcctctgacaaattcacaaatgtgtatgtgaaagaccttcctgaaact
accactgatgaggatcttaagaagctttttgagaagtatggaaccatcaccagtgcagta
gttatgaaagacaaaaatggaaagtccaagtgttttggcttcgtcaattatgagagctcg
gatgctgcagtctctgctgttgaacagttgaatggcagttccttgaaagaaaaagttctg
tatgtaggcaaggcccagaagaaatcagaacgggaagcaaaactgaaagccaaattcgaa
caagaaagagctagtcgatttgagaaactaaaaggtgctaacttatatttgaaaaatctc
gacagtgtgagtgatgaaaatctgaaagagttattctcggagtacggaaccataacgtcc
tgcaaggtgatgagcgactcaaaaggggtgagcaagggttctggctttgttgccttctcc
acccccgaggaagctacacgagctttgaacgaaatgaatggcaagttgataggaaagaaa
cctttatttgttgctgttgcccagcgcaaggatgaaagaagagcatcgctacaggcacat
tttgctcggatgcgaccagctggggggatggctcctcctcctggagctatgtctgggttt
cacaatggggcacctcgactagctcctcagcaggtctactttggtcaaggtgccccagga
cttatagcacctcaagccgctgaatttggcttccagcaacaactcatgcctggacttcgt
ccaggtgttggcccgaatttcctcttgccctatcagcttcagcgccaaggacaacacgga
cgtgttggtggaaggagaggagggaattctcaacagcagcagcagtggaactctggtaga
ttcaaacccaatggacgaaatggcatgcatcctagcatcactcaaggtatgatgggacca
attatgccagcgccatttgatgcttctgctatgacatcatctacgttggacatccaacgc
actaacccagtgccaccatcaacacttgcttcttctttggcctttgcttctccagaagat
cagcatcggatgcttggagagcagttatttccacttgtggaacgcattgaacgtgatcat
gctggtaaagttactgggatgttgcttgagatggatcaaactgaagtgcttcatctcatc
gagtcccctgatgctctcaataagaaagtttccgaggctatggatgtccttcgcttagca
gggccaggttctagtgttggtgataaatttggatctctcaccctgaatggatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (21)   

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