KEGG   Nicotiana tabacum (common tobacco): 107827829
Entry
107827829         CDS       T04643                                 
Name
(RefSeq) exosome complex component RRP41-like
  KO
K12587  exosome complex component MTR3
Organism
nta  Nicotiana tabacum (common tobacco)
Pathway
nta03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nta00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107827829
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nta03019]
    107827829
Messenger RNA biogenesis [BR:nta03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     107827829
SSDB
Motif
Pfam: RNase_PH RNase_PH_C Whib
Other DBs
NCBI-GeneID: 107827829
NCBI-ProteinID: XP_016510525
UniProt: A0A1S4DAV3
Position
Un
AA seq 174 aa
MMYSDTGRLNCNISYTTFATPDHGQGSDNKELSSMLHKALEGAIILESFPKTTVDVFALV
LESGGSDLPVVISCASLALADAGILLHDLVASVSVSCLGKNLVIDPISEEESYQDGSLMI
TCMPSRNEVTQLSITGEWSTPKTNEAMELCLGACSKLCEVMRSCLKDAVTDSKE
NT seq 525 nt   +upstreamnt  +downstreamnt
atgatgtatagtgatacaggacgcttaaattgtaacattagttacacaacttttgccacc
cctgatcatggacagggatcagacaacaaggagctttcctcaatgctacataaagcttta
gagggtgctataattctggaatccttcccaaagactactgtggatgtttttgctttggta
ttggaatctggtggaagtgatctccctgtggtcatatcatgtgctagtctagctttagca
gatgcgggaattttgctgcatgacttggttgcctcagtttctgtgtcttgtcttggaaag
aacctcgtcattgatcccatttctgaggaagaaagctaccaagatggaagcttaatgatt
acttgtatgccttcacgtaatgaggtcactcaactgtctataactggagaatggtcaaca
ccaaagactaatgaggcaatggagctatgccttggtgcttgttccaaactgtgtgaggtt
atgcgatcatgtttgaaagatgctgttactgattcaaaagaatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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