KEGG   Nicotiana tomentosiformis: 104086540
Entry
104086540         CDS       T05025                                 
Name
(RefSeq) histone deacetylase complex subunit SAP18-like isoform X1
  KO
K14324  histone deacetylase complex subunit SAP18
Organism
nto  Nicotiana tomentosiformis
Pathway
nto03013  Nucleocytoplasmic transport
nto03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:nto00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    104086540
   03015 mRNA surveillance pathway
    104086540
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nto03019]
    104086540
   03036 Chromosome and associated proteins [BR:nto03036]
    104086540
Messenger RNA biogenesis [BR:nto03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     104086540
Chromosome and associated proteins [BR:nto03036]
 Eukaryotic type
  Histone modification proteins
   HDAC complexes
    Sin3A-HDAC complex
     104086540
SSDB
Motif
Pfam: SAP18
Other DBs
NCBI-GeneID: 104086540
NCBI-ProteinID: XP_018622998
Position
Unknown
AA seq 156 aa
MAEVQRRGRPLPPPPARVPPGPPPLRMGPRVQPVDREKTCPLLLRVFTKIGGHHSDNDFA
VRGKEPKDEVQIYTWMDATLRELTDLVKEVAPEARRRDASLSFAFVYPDKRGRFVVREVG
RTYSYPNGRRPDSGSKSLSELKFQIGDYLDVAITFQ
NT seq 471 nt   +upstreamnt  +downstreamnt
atggcggaagtgcagagaaggggaagaccgttgcctcctcctccagcgagagtcccaccg
ggtcctcctcccctcagaatgggccctcgggtccaacccgttgaccgtgaaaagacttgt
ccactcttgcttcgcgttttcaccaagattggaggccatcatagtgataatgattttgcc
gtgagaggcaaggaacctaaagatgaggtccagatctatacatggatggatgctactctg
cgtgaattaactgatctggttaaagaggtagctccagaagcaagacgaagagatgcaagt
ttgtcatttgcttttgtgtatcctgataaacgagggcggtttgtggttagagaggtgggg
agaacgtactcttatccaaatgggagacgacctgatagtggcagcaaaagcttgagtgaa
ctaaaatttcagattggagattacttggatgtggctatcacgttccagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (1)   
   Pfam (1)   
All databases (15)   

Download RDF
DBGET integrated database retrieval system