KEGG   Nicotiana tomentosiformis: 104100936
Entry
104100936         CDS       T05025                                 
Name
(RefSeq) polyadenylate-binding protein 2-like isoform X1
  KO
K13126  polyadenylate-binding protein
Organism
nto  Nicotiana tomentosiformis
Pathway
nto03015  mRNA surveillance pathway
nto03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nto00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    104100936
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104100936
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nto03019]
    104100936
   03041 Spliceosome [BR:nto03041]
    104100936
Messenger RNA biogenesis [BR:nto03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     104100936
   mRNA cycle factors
    Stress granule specific factors
     104100936
Spliceosome [BR:nto03041]
 Complex C
  Other components
   Complex C specific factors
    104100936
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_occluded Nup35_RRM RRM_7 RRM_3 YflT SET_assoc HPS3_C FANCI_S4 BRAP2
Other DBs
NCBI-GeneID: 104100936
NCBI-ProteinID: XP_009606598
Position
Unknown
AA seq 660 aa
MAQIQVQHQSPVAGGNGVVAAAVGGAAAVATPGGLTSTSLYVGDLEFNVTDSQLYDLFNQ
VGQVVSVRVCRDLSTRRSLGYGYVNYSNPNDASRAMEMLNFTPVNGKSIRVMYSHRDPTL
RKSGSANIFIKNLDKSIDNKALHDTFSSFGNILSCKIATDSNGQSKGYGFVQYDNEESAQ
GAIDKLNGMLMNDKQVYVGHFLRKQERESTTGMTKFQNVYVKNLSESTTDDELKKVFGEF
GNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGKAQKKSEREQ
ELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSGISR
GSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQRKEERRAKLQLVQAQFSQLRPVAM
PPSLAPRMPIYPPGAPGIGQQLFYGQGPPAMIPPQAGFGYQQQLVPGMRPGGAPMPNFFM
PLVQQGQQGQRPGGRRGAGPVQQTQQPMPLMQQQMLPRGRMYRYPPGRNGPEGPMPGVPG
GMLSVPYDMGGMLPRDSAMGQPMPISTLASALANAPPEQQRTMLGESLYPLVDQLEHEHA
AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVQQTANPADQLASLSLNDNLVS
NT seq 1983 nt   +upstreamnt  +downstreamnt
atggcgcagattcaggttcagcaccagagtccggtggcgggaggaaatggtgtggtggct
gctgctgttggtggcgccgccgccgtagctactccaggtggtttaacgtcgacatcgctg
tacgtaggggacttggagtttaacgtgacggattcgcagctgtacgatctgttcaaccaa
gtcggtcaggttgtttcggttagggtttgtagggacctgagtactaggagatcccttggt
tatggttacgttaactacagcaaccctaatgatgcttcaagggcaatggagatgttgaac
ttcactcctgttaatggaaagtccatcagggtgatgtactctcatagggatcccactctt
cgcaagagtggatcagcaaatatatttatcaagaacttggacaagtcaattgacaacaaa
gctttacatgacacattttcaagctttggcaacattctttcttgcaaaatagctactgat
tctaatggccagtcaaagggttatggttttgtacaatacgacaatgaagaatctgctcaa
ggtgccatagataagttaaatggtatgctcatgaatgataagcaagtatatgttgggcat
tttctccgcaaacaggaaagagaatctacaaccggcatgacaaaattccaaaatgtctat
gtcaaaaatttgtcagagtctacgactgatgatgagctgaagaaagtttttggtgagttc
gggaacattactagtgcagtagtgatgagagatgcagatggaaaatccaagtgttttggg
ttcatcaattttgaaactgcagaggatgctgctaaggctgttgaatccttaaatggaaaa
aaatttgatgataaagagtggtatgttgggaaagcacagaagaaatctgaaagagagcaa
gaattgaaaagcaagtttgagcagactgccaaggaggcggttgataaataccaaggtctt
aacttgtatgtaaaaaatttggatgacaccattgatgatgagaagctcaaggaacttttt
tcagagttcggtacaataacttcatgcaaggttatgcgggatccaagtggaatcagcagg
gggtctggatttgttgccttctccacttccgaagaagcttccagagctctttctgagatg
aatgggaaaatgatagttagcaagccactctatgttgcactagcacagcggaaagaggag
agaagagcaaagttgcagttggtacaggcacaattttcacaactgcgaccagtggcaatg
cccccatcgcttgctcctcgcatgccaatctaccctcctggtgctcctgggattggacag
caactattttatgggcaaggtccccctgctatgattcctccccaggctgggtttggctat
caacaacagcttgtgcctgggatgcgtcctggaggagctcctatgccgaacttcttcatg
cccttagtccaacaaggacaacagggccagcgtccaggtggtcgacgaggagcagggcct
gtgcaacaaactcaacagcctatgcccttgatgcagcagcagatgctccctaggggaaga
atgtaccgctatccaccaggacgtaatggaccagaggggccaatgccaggagttcctggg
ggtatgctttctgttccatatgacatgggtggcatgcttcctcgtgattctgcaatggga
cagcctatgccaatttcaacattggcttctgcccttgcaaatgcaccacctgaacagcag
aggacgatgttgggtgaaagtttgtacccacttgttgatcagctggagcacgagcatgca
gcaaaggttacaggcatgcttcttgaaatggatcagactgaggttttgcatctgcttgaa
tcaccagaggctctgaaggctaaagttgctgaggctatggaagttctgaggaatgttcag
cagactgccaacccggctgaccaacttgcctcactttccctcaatgacaaccttgtttct
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (12)   
   Pfam (12)   
All databases (26)   

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