KEGG   Nicrophorus vespilloides (burying beetle): 108558559
Entry
108558559         CDS       T04922                                 
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X1
  KO
K12571  PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
Organism
nvl  Nicrophorus vespilloides (burying beetle)
Pathway
nvl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nvl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108558559
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nvl03019]
    108558559
Enzymes [BR:nvl01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     108558559
Messenger RNA biogenesis [BR:nvl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     108558559
  mRNA degradation factors
   3'-5' decay
    Pan complex
     108558559
SSDB
Motif
Pfam: UCH_1 PAN2_N RNase_T UCH DNA_pol_A_exo1 zf-CCCH_2
Other DBs
NCBI-GeneID: 108558559
NCBI-ProteinID: XP_017771009
Position
Unknown
AA seq 1194 aa
MYFDQTGIMGPDVSEMSGLESEYVQTQCVMADGGDRYGVCALAFDQSEELLWMGNQGGHV
TSYYTGHMQKYTSFQVHQNQDIRQILTMDEGILALTATSLRCQIRRGIPVFTHTSAHMTE
MQCMLQLSPHRLLLGGHKDKLIDFNMAVCKETKRADVGDAGCVMLRGHSRFVCAGNPLGR
IDLRDPNSLKVEHTLETHSGSLSDFDIQGNLLVTCGFSSRQGGNLSVDRFLMVYDLRMMR
AVSPIQTVVDPLYLRFLPSVSSRLAVVTALGQAQLVDTVALSNPKLSLLQMENPGTMCLA
FDISSSNQAMCFGDNAGSMHLFSSREDVIFNSYSRMTEHADTVASYPNFGIDDYDTPLSV
IPMPLISTEVLASDWPAHLMANTYRRAPAIDPEILRTMKMQGPIGYAPNPKASRRNQVMY
NLESNGVRSQSKQYSESRNFKQPVEESAGFVAIPKRYRKVEVKYNKLGVEDFQFDQYNKS
GFPGLEAMLPNAYCNAMIQVLYYTEPLRATLLSHLCEKEFCLSCELGFLFHMLSTCQNTP
CQPGNFLRAFRTVPEASALGLILSDLHPEAKMKVDLGALIQSWNRFILHQMHVEILEIKK
KREEGKINRKPFVYKETDFPAILGGSDRKKNFSSSDVNLSKLEDEKREEITEISQLLGTK
QLHINSCLKCNHEVRKESILLACNLVYPTNEPERDEWSFCDILKRSLTPEQVTPAWCDEC
SKFTPTSQARVLQSLPKLLAINTGLHNPQHKLFWQSQMDKIVAKAATTGLDTTPTRSSTP
TSSISSSKPCRYGDNCSRPGCRFRHSFDVAPQQSTSSNPYCSNNWLPHRLRMILKNDHLS
IRKLELDSDEPNEDDGESMEYNLTGVVCYITEPSTQERKNLVALIKVPGSYMQDGNNEPA
WYLFNDFSISCVPAHEATWFSLDWKTPCVLYYSTDEVTNASTNIFQSLNKDIFTQVNSIA
RGGGSAGITFTPLAEHEMPMPGDLVAMDAEFVTLNQEEAELRSDGKMSTIKPSQMSVARI
TCIRGQGPLEGIPFIDDYISTQEQVVDYLTKFSGIKPGDLDANFSSKHLTTLKSTYIKLR
FLQDSGVTFVGHGLKNDFRVINLVVPPEQVVDTVFLFHLPHHRMVSLRFLAWHFLGLKIQ
SETHDSTEDARAALQLYRRYKELEQENKIGDALSELYETGKILNWKVPEDESHQ
NT seq 3585 nt   +upstreamnt  +downstreamnt
atgtatttcgaccaaactggtataatggggcctgatgtgtctgaaatgtctggtctggag
agtgaatatgtgcagacccagtgcgttatggcagatggaggcgacaggtatggggtatgt
gcattggcctttgatcagagcgaagagctattatggatgggcaatcaaggaggacatgtt
acttcttactatacggggcatatgcaaaagtacacttcatttcaagtgcatcagaatcaa
gatattaggcagatattaacaatggatgagggaatcttagcattaactgctacttcactg
aggtgtcagattcgaaggggcattccagtgttcacgcacacatctgctcatatgacagag
atgcaatgcatgctgcaattatcgccgcatcgactgctcctcgggggccataaagataaa
ttaattgatttcaatatggctgtgtgcaaagaaactaaacgggctgacgttggagatgct
ggttgcgttatgttaagaggtcactcgagatttgtttgtgctggtaatcctttgggaagg
atagatttaagagaccccaacagtttgaaggtcgaacatactctggaaacgcacagtggt
agtttgagtgattttgatattcaaggcaatttgttggttacttgtggatttagtagtagg
caaggtggtaatttgtctgtggacagatttttgatggtttacgatttgagaatgatgagg
gctgtgagtccaatacagacagttgttgatcctttgtatttgagatttttaccatcagtg
tcttcaaggttggctgttgtaacagctttgggccaggcacaactggtggatactgtagct
ttatccaatcctaaactctcgttattgcaaatggaaaatccaggaacgatgtgtttggcg
ttcgatataagctcgtcgaatcaggctatgtgcttcggcgataacgccggttcaatgcac
ctgttctcctcgcgcgaagatgtaatattcaacagctactcgaggatgactgaacatgca
gatactgtagcgtcgtacccgaatttcgggatcgacgattacgatactccattgtccgtc
atcccgatgccgttaatatctacagaagttctggcttcggattggcccgctcatttgatg
gcgaacacctacaggagggcgccggcaatagatccagagattctcagaacaatgaagatg
cagggtcccatcggctacgcaccaaacccgaaggcctcgaggcgcaatcaagtgatgtac
aatctggagagtaacggcgttcggtcgcagtccaagcagtattcggagagcaggaacttc
aagcaacccgtcgaggagagcgccggatttgttgccattcctaagagataccgcaaggtc
gaagtgaagtacaacaagctgggagtcgaagactttcagttcgatcagtacaacaagtcg
ggttttccaggcttggaggcgatgctcccgaacgcatactgcaatgcgatgatacaagtt
ttgtattacacagagcctctgagggcgacgctgttgtcgcatctgtgcgaaaaggagttc
tgtttgtcctgcgagctcggcttcctctttcacatgctatcgacgtgccagaatacgcct
tgtcagcctggcaacttcctgcgtgccttccgcaccgttccagaagcttccgcgctcggc
ctcatcctcagcgatttacatccagaagccaagatgaaggtcgacttgggcgctctaatt
cagagctggaacaggtttatactacatcaaatgcacgtggaaattttggagatcaaaaag
aaacgcgaggaagggaagattaatagaaaaccgtttgtgtacaaagagactgattttcca
gcaatattaggaggtagtgatagaaaaaagaatttcagttcttcagatgtgaacctttcg
aaattggaagacgagaagcgcgaggagattaccgagattagccaattgctaggaacgaag
cagctgcatataaatagctgtttgaagtgcaaccatgaagtgaggaaagaatctattttg
ttggcctgtaatctggtgtatcccactaacgaacctgaaagagacgagtggtcattttgt
gatatccttaaaaggtccttaactccagaacaggttacgccggcatggtgtgacgagtgc
tctaaattcacgccgacgtctcaagctagggtacttcaatctctaccgaaactgttggca
attaatacaggactgcacaatccgcagcacaaattgttttggcaaagccaaatggataag
attgtcgctaaggcagcaacaactggtttggatactactcctacgagatcatcgacgcca
acatcttctataagttcatcgaaaccttgtaggtacggggataattgttcgagacccggt
tgcagatttaggcatagcttcgatgtcgctcctcagcaatcaacaagtagcaatccgtac
tgcagtaacaattggctgccgcacaggttgcgtatgattctgaaaaacgatcatttaagt
atacgtaaattagaattggactctgatgaaccgaacgaagacgatggagagagcatggag
tacaatctaaccggcgttgtttgctacataacggagccgtcgacgcaggagagaaagaat
ttggttgctctgatcaaagttccggggagttacatgcaggatggcaacaacgaaccggca
tggtaccttttcaacgatttcagtataagttgcgtgcccgctcacgaggccacctggttc
agtttggattggaagacaccgtgcgttctgtactactccactgatgaggtgacaaacgcc
tcgacgaacatattccaatcgctgaacaaggacattttcacgcaagtaaacagcattgcg
agaggcggtggttccgctggaattactttcacaccgttggcggaacacgagatgccgatg
cccggtgatctggtggcgatggacgcggaattcgtcaccttaaaccaggaggaagcggag
ctcaggagcgacggaaagatgtcgacgataaagccgtctcaaatgtcggtggctagaatt
acctgcattcgcggtcaaggtccactcgaaggcattccgttcatcgacgactacatctcc
acgcaagaacaggtcgtcgattatctgaccaagttctcggggattaaaccaggcgatctg
gatgcaaacttcagctcgaaacacttgaccactctgaaatccacgtacattaagctccgg
tttttacaggacagtggcgtgactttcgttggacacggtcttaaaaatgatttcagagtg
atcaatttggttgtaccaccggagcaggtcgtggacactgttttcttgttccatctgccg
catcatcgaatggtctccttaaggttcttagcctggcatttcctaggtttgaagatccaa
tcggagacgcacgattcgacagaggacgctcgtgccgcgttgcagctataccgaaggtac
aaagagttggagcaggagaacaagatcggcgacgctctttctgagctctatgagaccggt
aaaatcctaaactggaaggtgcccgaagacgagtcccatcaataa

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