KEGG   Ornithorhynchus anatinus (platypus): 100078150
Entry
100078150         CDS       T01045                                 
Symbol
HMGB1
Name
(RefSeq) high mobility group protein B1
  KO
K10802  high mobility group protein B1
Organism
oaa  Ornithorhynchus anatinus (platypus)
Pathway
oaa03410  Base excision repair
oaa04140  Autophagy - animal
oaa04217  Necroptosis
oaa04613  Neutrophil extracellular trap formation
Brite
KEGG Orthology (KO) [BR:oaa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    100078150 (HMGB1)
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    100078150 (HMGB1)
  09143 Cell growth and death
   04217 Necroptosis
    100078150 (HMGB1)
 09150 Organismal Systems
  09151 Immune system
   04613 Neutrophil extracellular trap formation
    100078150 (HMGB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:oaa03036]
    100078150 (HMGB1)
   03400 DNA repair and recombination proteins [BR:oaa03400]
    100078150 (HMGB1)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:oaa04147]
    100078150 (HMGB1)
Chromosome and associated proteins [BR:oaa03036]
 Eukaryotic type
  Nucleosome assembly factors
   HMG (high mobility group) proteins
    100078150 (HMGB1)
DNA repair and recombination proteins [BR:oaa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     100078150 (HMGB1)
   MMR (mismatch excision repair)
    Other MMR factors
     100078150 (HMGB1)
Exosome [BR:oaa04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   100078150 (HMGB1)
SSDB
Motif
Pfam: HMG_box_2 HMG_box NOA36 HMG_box_5 Nop14
Other DBs
NCBI-GeneID: 100078150
NCBI-ProteinID: XP_028904236
Ensembl: ENSOANG00000014719
Position
20:complement(3221398..3226881)
AA seq 215 aa
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDAAVNFSEFSKKCSERWKTMSAKEKGKF
EDMAKADKVRYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDVGKKGVAKAEK
SKKKKEEEEDEDDDEDDEEDEEDEDEDDEDDDDDE
NT seq 648 nt   +upstreamnt  +downstreamnt
atggggaaaggtgatcctaagaagccaagagggaaaatgtcttcgtatgccttctttgtg
caaacctgccgagaggagcacaagaagaaacatccagatgctgcagtgaacttctcagag
ttctcaaaaaagtgttcagaacggtggaagaccatgtccgctaaagaaaaaggaaagttc
gaagacatggcaaaggctgacaaggttcgttatgaaagagaaatgaaaacctacataccc
cctaaaggagaaacaaaaaagaagttcaaggatcccaatgcaccgaagaggcctccttcg
gcttttttcttattctgctctgagtatcgtccaaagatcaaaggagaacaccccggcctt
tccattggagacgttgccaagaagctgggagagatgtggaataacaccgctgccgatgac
aagcagccctacgaaaagaaggccgctaagctgaaggaaaaatacgaaaaggatattgcc
gcataccgagctaagggaaagcctgatgtagggaaaaagggagtcgccaaggccgagaag
agcaagaaaaagaaggaagaagaagaggacgaggacgacgacgaagacgacgaggaggac
gaggaagacgaggacgaggatgacgaagatgatgatgatgacgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (27)   

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