KEGG   Oscillatoria acuminata: Oscil6304_5990
Entry
Oscil6304_5990    CDS       T02368                                 
Name
(GenBank) NAD-dependent DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
oac  Oscillatoria acuminata
Pathway
oac03030  DNA replication
oac03410  Base excision repair
oac03420  Nucleotide excision repair
oac03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:oac00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Oscil6304_5990
   03410 Base excision repair
    Oscil6304_5990
   03420 Nucleotide excision repair
    Oscil6304_5990
   03430 Mismatch repair
    Oscil6304_5990
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:oac03032]
    Oscil6304_5990
   03400 DNA repair and recombination proteins [BR:oac03400]
    Oscil6304_5990
Enzymes [BR:oac01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Oscil6304_5990
DNA replication proteins [BR:oac03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Oscil6304_5990
DNA repair and recombination proteins [BR:oac03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Oscil6304_5990
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Oscil6304_5990
   MMR (mismatch excision repair)
    DNA ligase
     Oscil6304_5990
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Oscil6304_5990
SSDB
Motif
Pfam: HHH_2 DNA_ligase_OB HHH_5 ATG16 Crescentin DUF4201 DUF1664 TPR_MLP1_2 Filament TX13_rpt CENP-F_leu_zip CCDC93_CC MscS_porin Rootletin DUF745 IFT57 DNA_ligase_ZBD CALCOCO1 APG6_N EzrA DUF4763 Fez1 CENP-H HAP1_N FPP AAA_13 FAP DUF3584 Auto_anti-p27 YabA DUF724 DAHL ALIX_LYPXL_bnd zf-ribbon_3 WEMBL Leu_zip Golgin_A5 ATG17_like HMMR_C
Other DBs
NCBI-ProteinID: AFY85452
UniProt: K9TRI6
Position
7671643..7674288
AA seq 881 aa
MFYARLNSLASIPDHQRMILKVNPLKKRIRGGKKEVTTDITTKEVRAQIEAIKIKVERNG
HLTPIAQIAPVEVEGTKIEYATFLGSDRFTELNPQIGDTLLLCHGGTDKMAEVVGVIAEE
RSSGSQPFKMPTHCPECGSPVIRTSDDEISCLNSSCAPILPYSLLNWASRDAMEISGLGE
KLAYQLIEHGLVKSIADLYELNADQLITLERMGKKSAKNLLKAIAKSKSLPWSRVLASLG
IRHVGRATAQMLTQEFATVGNLAKAEITELEAIERISPEIAQSVYHWFRIQANQTLIERL
SAAGLQLPSVALPEILDVPVAPETATQQVQPSPAPLDKEPVPMPAPSTSKTPSHAESPLD
ASAQELQTATERNAQLQSELEQATQHSGQLRSELEEIRTTLERAEQQTAQLQSELAESRQ
QLTQANQSESLESELAQKNTQLTQAQEQTAQLNAQLQEIQSALAASTRQTEELQTELEQS
KQHSGELDSQLNQLRTELEQSKQHSGELDSQLTQLRTELEQSKQHSGELDSQLTQLRTEL
EQSKQHSGELDSQLTQVRTELEQSKQHSGELDSQLTQVRTELEQSKQHSEELDSQLTQLR
TELEQSKQHSGELDSQLTQVRTELEQSKQHSGELDSQLTEVRTELEQSKQHSGELDSQLT
QVRTELEQSKQHSGELDSQLTQVRTELEQSKQHSGELDSQLTEVRSQLAQVQQERSQIQS
QLEERGERLQQLEGEKQDLQQQLSETRTQLLGVEEMRSHLQTELAQIKAENERAQQQRSD
LETQLAKSHAAQSQLQGDLNETQEKLQRLLHDQSHSQSQVTQANSERSDVLSQLEAANQA
RSQLESQLALVRSQTPLLKTGVVLAFLFGSLIAWFSALAIY
NT seq 2646 nt   +upstreamnt  +downstreamnt
ttgttctatgccagacttaatagtttagcgtcgatccctgatcaccagaggatgatcctc
aaggttaacccattaaagaaaaggattagaggaggtaaaaaagaagtgacgaccgatatt
accacaaaagaagtccgagcgcagatcgaagccataaaaattaaagttgaacgcaacggc
catttgaccccgatcgcccagattgcacccgtcgaggtagagggtactaaaattgagtac
gccaccttcctcggcagcgatcgcttcacggagttaaacccccaaatcggcgataccctc
ctgctgtgtcatggaggaaccgataaaatggcggaagtggtcggggtgatcgcagaagaa
cgctcttccggcagtcaaccctttaaaatgcccacccactgcccagaatgcggatccccg
gtcatccggaccagcgatgatgagatcagttgccttaattcctcctgtgctcccattctt
ccctacagcctgctcaattgggccagtcgagatgcaatggaaattagcggattgggagaa
aaactggcctaccaattgattgaacatggactggttaaatccattgccgacttgtacgaa
ctcaatgctgaccaactgatcaccctggaacggatggggaaaaaatcggcgaaaaacctg
ctcaaggcgatcgctaaatccaaatccctcccttggtccagagtcctcgccagtttgggt
atccgccacgtcggtcgtgccacggcgcagatgctcacccaggaatttgctacggtcgga
aacctcgccaaagctgaaatcaccgaactagaggctattgagcgcatcagtccggaaatc
gcccagtctgtctatcactggttccgaattcaagctaatcaaaccttaattgagcgctta
tccgctgctggattgcaactgccctcggtggcattacccgagatcctcgatgtccccgtc
gccccagaaaccgcgacccagcaggtccaaccctcccctgcacccctggacaaagaacct
gttcccatgcctgctccttctacctcaaaaaccccctctcatgcagagtccccattggat
gcctcggctcaagaattacaaaccgccactgaacgcaacgctcaattacaatcagagtta
gagcaagctactcagcattcgggtcaattgcgatcggagttagaggaaattcggaccacc
ctagaacgggccgaacaacaaactgcacaactccaatcggaattagcggaaagtcggcag
cagttgacacaggcgaatcaatctgaatctctggaatcggaactagctcaaaagaacacc
caactcacccaagctcaggagcaaacggctcaattaaatgctcagttacaggaaattcag
tccgcgttagcagcatctactcgccaaactgaagaactccaaactgagttagagcaatca
aaacagcattcaggggaattagactctcaactgaatcagttacgaactgagttagagcaa
tcaaaacagcattcaggggaattagactctcaactgactcagttacgcacggagttagag
caatcaaaacagcattcgggagaattagactctcaactgactcagttacgcacggagtta
gagcaatcaaaacagcattcgggggaactagactctcaactgactcaggtgcgaactgag
ttagagcaatcaaaacagcattcgggagaattagactctcaactgactcaggtgcgaact
gagttagagcaatcaaaacagcattcggaagaattagactctcaactgactcagttacgc
acggagttagagcaatcaaaacagcattcgggagaattagactctcaactgactcaggtg
cgaactgagttagagcaatcaaaacagcattcaggggaactagactctcaactgactgag
gtgcgaactgagttagagcaatcaaaacagcattcaggagaattagattctcaactgact
caagtgcgaactgagttagagcaatcaaaacagcattcaggagaattagattctcaactg
actcaggtgcgaactgagttagagcaatcaaaacagcattcaggggaactagactctcaa
ctgactgaggtgcgatcgcagttagcgcaagtgcaacaagagcgatcgcagattcaatcc
cagttagaggaacggggggaaagattacaacaactcgaaggggagaaacaggacttgcaa
cagcaactctctgaaacgcggacccagttattgggagtggaagagatgcgatcgcacttg
caaaccgaactcgctcaaatcaaggcagaaaacgagcgcgcacaacaacagcgatcggac
ttagagactcagcttgccaaatcccatgcagcacagtcccaactccagggggatttaaac
gaaacccaagaaaaattacagcgcctgttgcacgatcaatcccacagccaatcccaagtc
acccaagccaacagcgagcgatcggatgtactatcgcaattggaagctgctaaccaagcg
cgatcgcagctagaatcccaactcgccctcgtgcgatcgcaaacccccctgttaaaaaca
ggagtagttctagcattcctcttcgggtccttaattgcctggttctcagccttagccatt
tactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (139)   
   KEGG ORTHOLOGY (1)   
   RefGene (136)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (39)   
   Pfam (39)   
All databases (195)   

Download RDF
DBGET integrated database retrieval system